Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01192 ATGAGCAAGGTGAAGAATTATACCTTAACCAATCAAGCACTGATCGTGCCTTTCTCCAACAATAACAGCATGTTGGATCATCAGCCACAGCTCGAAACCCTTCAGACCATTACTCATTCTGCTGAGGCTCACCATAATCCTACAACACAGATTCCATCACACTCTGTCTACAATACCACATATGATTTTTCTCCTCCTTCGAAAACTGACTCTGCTGAAAAGAACAAGAATCTGGTTGGAAACAAAAGGAAGAGAAACAATGACGGGTTTAAAGAGAAAGGAGATGGAGTTATCCATGTAAGGGCAAAGAGAGGCCAAGCAACTGATAGCCACAGTTTGGCAGAAAGGGTGAGAAGAGAAAAAATCAATGAGAAGATGAGATATTTGCAGGAGTTGGTTCCAGGGTGCTATAAGTCTATGGGAATGGCTGTAATGTTGGACGTGATAATAGATTATGTTCAATCTCTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCAAGCGTGTATTTTGATTTCAGCAGCAGTGATATGGATGCCACTGAAATCATGCAGATATTCTTACCGAAAAACTAA 585 0.4085 MSKVKNYTLTNQALIVPFSNNNSMLDHQPQLETLQTITHSAEAHHNPTTQIPSHSVYNTTYDFSPPSKTDSAEKNKNLVGNKRKRNNDGFKEKGDGVIHVRAKRGQATDSHSLAERVRREKINEKMRYLQELVPGCYKSMGMAVMLDVIIDYVQSLQQQIEFLSMKLSAASVYFDFSSSDMDATEIMQIFLPKN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01192 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 156 IPR011598 GO:0046983
Lapu2g01192 194 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 181 IPR024097 GO:0006355
Lapu2g01192 194 MobiDBLite consensus disorder prediction 75 95 - -
Lapu2g01192 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 172 IPR036638 GO:0046983
Lapu2g01192 194 Gene3D - 102 172 IPR036638 GO:0046983
Lapu2g01192 194 CDD bHLH_AtBPE_like 96 181 - -
Lapu2g01192 194 MobiDBLite consensus disorder prediction 45 95 - -
Lapu2g01192 194 MobiDBLite consensus disorder prediction 45 74 - -
Lapu2g01192 194 Pfam Helix-loop-helix DNA-binding domain 110 157 IPR011598 GO:0046983
Lapu2g01192 194 SMART finulus 112 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01192 Lapu-Chr2 21137400 21139001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01192 92 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 75.258 8.61e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01192 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01192 - - aprc:113869931 277.715