Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01160 ATGCAATTCGCTGAGAAAATGCTTCCCCGGAGAATGGGGTTCCGTGAGTACATCGCAGCATTGGAGGAAGAAAGGAGGAAAATTCAAGTTTTCCCCAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAAGGCTGTAGGCAGCAATTGTCTGGAACGGTTACGGAGTATAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTCTTAAGAAAAGGGCATCTCAAGATTCTGTTGAAGAAGAAGAAGAAGAAGATGATGAACAACATTCTCATCAGTACAAGAAAACCACTTCTGATAAGAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAACCCTCCTGCCACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGACGAAAAAAGTGGTGTAGTTAATGGAAAGGCTAATAATCATGCATCAGCAATTGGTAAAGCACCCTCCTCACCACCAGTGCCCGCTACAAGTTCCACAGAACCAGTGAGAATAGACAGCAAAAAAGAGGAAAAAGGTCAGAGAAAGCAACGCCGGTGTTGGTCACAGGAATTGCACAAGAGATTCTTGCATGCACTTCAGCAACTTGGAGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCATTTACAGAAATTTCGTCTGCACACCAGAAGAAGCCCCATAATGCACAACAACGCAAATTCACAGGCAGCCCCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAATATGGTGCAGTGGCTACCTCAGCAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTTCAACTGGAATATATGCACCCGTGGCTGCACACCCTCCACCTGTCACACACACACCAATTATGAATCAAGAAAGGGCTAATAATCACAGTGTTCAATCAAACTCACCTGCATCATCATCTTCCACACACACCATCACAACTACTTCTTATGCCCCTTGA 1101 0.455 MQFAEKMLPRRMGFREYIAALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPLKKRASQDSVEEEEEEDDEQHSHQYKKTTSDKKKSDWLRSVQLWNPNPPATKEDVPRKANVVEVKRNGGAFQPFQRDEKSGVVNGKANNHASAIGKAPSSPPVPATSSTEPVRIDSKKEEKGQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIMHNNANSQAAPLFLVGNIFVQPPEYGAVATSAASGGELTTVTASTGIYAPVAAHPPPVTHTPIMNQERANNHSVQSNSPASSSSTHTITTTSYAP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01160 366 FunFam Myb family transcription factor 209 267 - -
Lapu2g01160 366 MobiDBLite consensus disorder prediction 197 214 - -
Lapu2g01160 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Lapu2g01160 366 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Lapu2g01160 366 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Lapu2g01160 366 Gene3D - 209 267 - -
Lapu2g01160 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Lapu2g01160 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 344 IPR044787 GO:0003700|GO:0006355
Lapu2g01160 366 MobiDBLite consensus disorder prediction 85 118 - -
Lapu2g01160 366 MobiDBLite consensus disorder prediction 340 366 - -
Lapu2g01160 366 MobiDBLite consensus disorder prediction 151 214 - -
Lapu2g01160 366 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01160 Lapu-Chr2 20362425 20364884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01160 1 342 G2-like Transcription Factor Family AT1G68670 46.154 6.21e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu2g01160 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01160 - - gmx:100819750 528.865