Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01159 ATGCAAACTCACCCTTTCTCCTACATATCCTCCTGTCCTGGTAGTAGTGCCTTCTTGGAACCTCATCATCATCAGGAGGCTGTGGATGAAGCCTCCATCTCCCTTTCTCTTGGCCCTCCTGGCCAACAACACAACCCCAAAGGCACTTCCTCCTGCTCCTCCTCCACTAACCGCCCTTCCACTCTTCACCATTACCGGCATAACCCTACCACTGATGACCAGAGAGGTGTAACAGTGGCCCTTCACATTGGCCTTCCCAATCCCACCATTTCACCAAACACTCCCACCCCCACTACCAAGCCTGATCTTCATTTGACCTCTGCTCCCATTCAAGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACAGTCTGCAACAAGATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGATCACAATATAGGAAAGGACCTGAATCGCTGAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAGAATAACATAGACCATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACTCTTCAGACTCACTACAAGAGGAAGCATGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGCGGAAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGCGCCTTTGGTGATGGCCACGCTCCACACACTGTGGAGAGTTGTGATCAGATTGGGGAAGATGACTTGTTTGGTGAGGAAGATGAAGAGGAATTGGATTTAGAAGATGATGAAGAAGATTATAATAGTAATGAAGTGGTTTTTGATTTTAATTAA 930 0.486 MQTHPFSYISSCPGSSAFLEPHHHQEAVDEASISLSLGPPGQQHNPKGTSSCSSSTNRPSTLHHYRHNPTTDDQRGVTVALHIGLPNPTISPNTPTPTTKPDLHLTSAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGEEDEEELDLEDDEEDYNSNEVVFDFN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01159 309 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
Lapu2g01159 309 MobiDBLite consensus disorder prediction 284 309 - -
Lapu2g01159 309 MobiDBLite consensus disorder prediction 36 64 - -
Lapu2g01159 309 SUPERFAMILY beta-beta-alpha zinc fingers 114 150 IPR036236 -
Lapu2g01159 309 Gene3D Classic Zinc Finger 172 260 - -
Lapu2g01159 309 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Lapu2g01159 309 MobiDBLite consensus disorder prediction 284 302 - -
Lapu2g01159 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Lapu2g01159 309 MobiDBLite consensus disorder prediction 35 73 - -
Lapu2g01159 309 PANTHER ZINC FINGER PROTEIN WIP2 20 289 IPR043584 GO:0003700|GO:0010468
Lapu2g01159 309 FunFam Zinc finger protein WIP2 183 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01159 Lapu-Chr2 20335335 20336888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01159 29 270 C2H2 Transcription Factor Family AT1G13290 72.840 4.18e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01159 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01159 - - aprc:113870355 507.294