LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu2g01155	ATGGATGCGATCAGCTGCATGGACGAGAGTACCACCACTGAATCACTCTCCATAAGCCTTTCTCCGACCATCTCATCGGAAGAGAAGCTACTTTTACCTTCTCCCTTACTATCATCCAAGAACCCTTCTCCTCCGCCGCCATCCAACACGCTCTGTCGCGTCGGCAGCGGCGCCAGCGCAATCGTAGATCCTGACGGCGGCGGCGGGAACACCGAGGCGGAGTCTAGAAAGCTTCCCTCCTCCAAGTACAAAGGCGTGGTGCCGCAACCCAACGGGCGCTGGGGTGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCCTACGACATCGCCGCGCAGCGGTTCCGCGGCAAGGACGCAGTCACCAACTTCAAGCCCGTCTCCGGCGCCTCCGGAGACCTCGACGATGACGACGGAGAGGCCGAGTTTCTCAGCTCGCATTCCAAGTCGGAAATCGTCGACATGCTGAGGAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGAGTCGTTCGGCGGCGAGGCGGATCCGCCGCCGCCGGAACGGGGAACTCGATCTCCGGCGCGTGTTTTGTGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCCGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGTTAACGGCGTTAGTGCGACGGCAGCGAAGGGCGTTCTGCTGAACTTCGAAGACGTTGGGGGGAAAGTGTGGCGCTTCCGTTACTCGTACTGGAATAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGATTGTTCGGACCGGTCGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTCTGAAACTACCAGGTTCGGAGCCTAATAATAATAACAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAACTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGCGCTTTGTAA	1197	0.5614	MDAISCMDESTTTESLSISLSPTISSEEKLLLPSPLLSSKNPSPPPPSNTLCRVGSGASAIVDPDGGGGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGASGDLDDDDGEAEFLSSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGSAAAGTGNSISGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNNNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL*	399

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu2g01155	398	ProSiteProfiles	AP2/ERF domain profile.	82	137	IPR001471	GO:0003700\|GO:0006355
Lapu2g01155	398	Gene3D	-	205	330	IPR015300	-
Lapu2g01155	398	CDD	B3_DNA	214	308	IPR003340	GO:0003677
Lapu2g01155	398	MobiDBLite	consensus disorder prediction	1	20	-	-
Lapu2g01155	398	SMART	rav1_2	82	143	IPR001471	GO:0003700\|GO:0006355
Lapu2g01155	398	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	77	366	IPR044800	GO:0003700
Lapu2g01155	398	MobiDBLite	consensus disorder prediction	32	92	-	-
Lapu2g01155	398	Pfam	B3 DNA binding domain	215	320	IPR003340	GO:0003677
Lapu2g01155	398	SUPERFAMILY	DNA-binding pseudobarrel domain	213	318	IPR015300	-
Lapu2g01155	398	CDD	AP2	81	139	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu2g01155	Lapu-Chr2	20227429	20229050	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu2g01155	5	398	B3 DNA Binding Superfamily	AT1G25560	58.272	2.96e-147	420

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-RAV	Lapu2g01155		B3	3.2e-28	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu2g01155	K09287		-	gmx:100801107	625.165

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