Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01155 ATGGATGCGATCAGCTGCATGGACGAGAGTACCACCACTGAATCACTCTCCATAAGCCTTTCTCCGACCATCTCATCGGAAGAGAAGCTACTTTTACCTTCTCCCTTACTATCATCCAAGAACCCTTCTCCTCCGCCGCCATCCAACACGCTCTGTCGCGTCGGCAGCGGCGCCAGCGCAATCGTAGATCCTGACGGCGGCGGCGGGAACACCGAGGCGGAGTCTAGAAAGCTTCCCTCCTCCAAGTACAAAGGCGTGGTGCCGCAACCCAACGGGCGCTGGGGTGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCCTACGACATCGCCGCGCAGCGGTTCCGCGGCAAGGACGCAGTCACCAACTTCAAGCCCGTCTCCGGCGCCTCCGGAGACCTCGACGATGACGACGGAGAGGCCGAGTTTCTCAGCTCGCATTCCAAGTCGGAAATCGTCGACATGCTGAGGAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGAGTCGTTCGGCGGCGAGGCGGATCCGCCGCCGCCGGAACGGGGAACTCGATCTCCGGCGCGTGTTTTGTGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCCGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGTTAACGGCGTTAGTGCGACGGCAGCGAAGGGCGTTCTGCTGAACTTCGAAGACGTTGGGGGGAAAGTGTGGCGCTTCCGTTACTCGTACTGGAATAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGATTGTTCGGACCGGTCGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTCTGAAACTACCAGGTTCGGAGCCTAATAATAATAACAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAACTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGCGCTTTGTAA 1197 0.5614 MDAISCMDESTTTESLSISLSPTISSEEKLLLPSPLLSSKNPSPPPPSNTLCRVGSGASAIVDPDGGGGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGASGDLDDDDGEAEFLSSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGSAAAGTGNSISGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNNNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01155 398 ProSiteProfiles AP2/ERF domain profile. 82 137 IPR001471 GO:0003700|GO:0006355
Lapu2g01155 398 Gene3D - 205 330 IPR015300 -
Lapu2g01155 398 CDD B3_DNA 214 308 IPR003340 GO:0003677
Lapu2g01155 398 MobiDBLite consensus disorder prediction 1 20 - -
Lapu2g01155 398 SMART rav1_2 82 143 IPR001471 GO:0003700|GO:0006355
Lapu2g01155 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 77 366 IPR044800 GO:0003700
Lapu2g01155 398 MobiDBLite consensus disorder prediction 32 92 - -
Lapu2g01155 398 Pfam B3 DNA binding domain 215 320 IPR003340 GO:0003677
Lapu2g01155 398 SUPERFAMILY DNA-binding pseudobarrel domain 213 318 IPR015300 -
Lapu2g01155 398 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
Lapu2g01155 398 SUPERFAMILY DNA-binding domain 81 137 IPR016177 GO:0003677
Lapu2g01155 398 FunFam AP2 domain-containing protein RAP2.8 81 138 - -
Lapu2g01155 398 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Lapu2g01155 398 ProSiteProfiles B3 DNA-binding domain profile. 215 323 IPR003340 GO:0003677
Lapu2g01155 398 SMART B3_2 215 323 IPR003340 GO:0003677
Lapu2g01155 398 MobiDBLite consensus disorder prediction 179 198 - -
Lapu2g01155 398 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01155 Lapu-Chr2 20227429 20229050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01155 5 398 B3 DNA Binding Superfamily AT1G25560 58.272 2.96e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lapu2g01155 B3 3.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01155 K09287 - gmx:100801107 625.165