Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01149 ATGGCTGGGCCATCATGGTTGGTGGACAAAAGTAGAATTGCGACCAAAATAAAATGTGCTTCAGGAACGTGTGATCCTAAACAGATTGTATGGAAAAGCAATCCTACCAAGCCTTGCCCAAATTGTCAACATGACATTGACAACAGTGATGTAGCACAAGAGTGGCCCGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTTGCACTTGTGTGCAAAAGTCGGGGTAGAAGATTCTAAGCCTCATCCTTTCATTGATGAATTTATTACTGATCTTGAAGAAGATGATGGAATTTGCTATACTCATCCTCAAAAGTTACCTGGTATTAAGCAAGATGGAAGTGCTTCCTACTTTTTCCATAGAGCAATCAAGGCTTACAACTCTGGCAATCGCAAGCGCCGAAAAATAAGAAGTCCTGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAACACTAAACCAATTGTCTTGGATGGGACCAGAAAAGGCTGTAAAAAGATTATGGTTTTGTATGAGAGAAATGAAAAAGGAGAGGAGAAAACTAATTGGGTTATGCACCAGTATCACCTAGGAACATACAAAGATGAAAAGGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTCAAGTTGGGTGATAAAGAGGACCTAGTTGTTCTTGAAACCACTGAATCAAGAGCTGTGAAGGTGGATGCTGTCACTCCCGAATTGGTGACTCTTGAGCCTCCTTGCAACGAAAGGCAGTGTGCAGATCTAGACCAAGGACAAGAAACAGATAACATTCCACAACTGTCTCAGATGGATTGTTTATATGAAATTCAAGATGATTGCCAAGAACTTGCAACTGAATCTCAATGTAATGAAGGAATGGATAATAACGAAAGTAATGCCGAGGAAGGCCAAAAGTGGTGGGACAGTGAGTCACAGCATCTGTTGGATTCGCAACAACTGGTTGACAATCTGTCTCTGTTTGACGACCTCATCCACAGCCAGTCTCCTGGTAGAGATGGAAAACATGAAGATCAAAAGAACCAACCTGGTCTCTCTGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAAAGTGTCAAAATCTTGTTCATGATCCTGCAAATATAGAGAATGATACCGCTTCAGAGCTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTGCCTGGGGATACAACAAGGCACTGAACTAA 1248 0.4167 MAGPSWLVDKSRIATKIKCASGTCDPKQIVWKSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIILHLCAKVGVEDSKPHPFIDEFITDLEEDDGICYTHPQKLPGIKQDGSASYFFHRAIKAYNSGNRKRRKIRSPDFGDVRWHKTGNTKPIVLDGTRKGCKKIMVLYERNEKGEEKTNWVMHQYHLGTYKDEKDGEYIFSKVFYQQQVKLGDKEDLVVLETTESRAVKVDAVTPELVTLEPPCNERQCADLDQGQETDNIPQLSQMDCLYEIQDDCQELATESQCNEGMDNNESNAEEGQKWWDSESQHLLDSQQLVDNLSLFDDLIHSQSPGRDGKHEDQKNQPGLSVYAQLGPECLKKDIEKCQNLVHDPANIENDTASELRLSQLEFGSQDSFIAWGYNKALN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01149 415 FunFam NAC domain-containing protein 8 67 218 - -
Lapu2g01149 415 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
Lapu2g01149 415 Gene3D NAC domain 67 218 IPR036093 GO:0003677|GO:0006355
Lapu2g01149 415 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Lapu2g01149 415 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 375 IPR044799 GO:0003700
Lapu2g01149 415 SUPERFAMILY NAC domain 44 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01149 Lapu-Chr2 20034425 20040923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01149 23 216 NAC Transcription Factor Family AT1G28470 51.980 1.28e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu2g01149 NAM 4.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01149 - - gmx:100799488 673.315