Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01148 ATGCAGAATTGTGAAATAAAAACACTTGGCGATGAAGGGCTTACTTTTATAACAGCACAAGCAAGAAAAAATAAGAAAGAGGACAATGGCTACTCCTTTGTACATTGTGAACTTACCGGAACTGGAACTGGTTCTTACCTGGGCAGAGCGTGGTTTGGTTATTCCACAGTGATCTTTGCTTACACTAACATGGGCAACATTTTCGACAAGGAAGCTTGGAGTAACAACAATCACCCTGAATATGACAAAACTCTTTATTTCGGGGAGTATAAGAACACAGGACCTGGTGCAGATGCCACAGGACGTTCTCCACTGACAAGGCAACTCAGTGACGCAGAGGTCAAACCATACCTAACTCTTGGTATGCTACAAGGCTCCAAATGGATACTTCCTCCTCCCAAACTCTAA 408 0.4314 MQNCEIKTLGDEGLTFITAQARKNKKEDNGYSFVHCELTGTGTGSYLGRAWFGYSTVIFAYTNMGNIFDKEAWSNNNHPEYDKTLYFGEYKNTGPGADATGRSPLTRQLSDAEVKPYLTLGMLQGSKWILPPPKL* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01148 135 Gene3D - 1 132 IPR012334 -
Lapu2g01148 135 SUPERFAMILY Pectin lyase-like 2 129 IPR011050 -
Lapu2g01148 135 Pfam Pectinesterase 1 103 IPR000070 GO:0030599|GO:0042545
Lapu2g01148 135 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01148 Lapu-Chr2 19993355 19993902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01148 3 134 Carbohydrate Esterase AT5G07430 48.485 3.27e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01148 K01051 - gmx:100786427 200.29