Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01078 ATGGATAATGGAAATGAGGAGGAAGAGAGTAGCGGTGAAGGGGAAGCAGTGAATGAGGCTAAAATGGTGAAGAACATAATAATAAGGTTAGTGTGTGGTAATGGGAAGGGTTCATCAAGAACAGGGTCATCATCTTCTACTCAGAGTTTCTGTCAGGCAGATGAATGTGGTGTGAACCTGAACATGGCCAAGAGTTACAACCGCCGCCACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTACTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAGTTTGATGAGACCAAAAGAAGTTGCAGGAAAACATTGGCTGTGCATAATGAACGTAGAAGAAAAGCTCGCACAGATCTCAAGTGA 393 0.4351 MDNGNEEEESSGEGEAVNEAKMVKNIIIRLVCGNGKGSSRTGSSSSTQSFCQADECGVNLNMAKSYNRRHKVCERHSKAPVVLVTSIRQRFCQQCSKFHELAEFDETKRSCRKTLAVHNERRRKARTDLK* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01078 130 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677
Lapu2g01078 130 SUPERFAMILY SBT domain 50 128 IPR036893 GO:0003677|GO:0005634
Lapu2g01078 130 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 125 IPR044817 GO:0003677
Lapu2g01078 130 Gene3D - 41 112 IPR036893 GO:0003677|GO:0005634
Lapu2g01078 130 Pfam SBP domain 51 124 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01078 Lapu-Chr2 16052145 16052881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01078 42 128 SBP-box Gene Family AT2G33810 56.322 1.15e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu2g01078 SBP 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01078 - - vum:124835315 187.193