Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01045 ATGTCAAACCCAGTGTTTCTCAAGCCTCCAGATAGCACTGAATGGAAAATATACTGGACTAAGCGTGATGGTGAGATGTGGTTTCAAAAGGGATGGAAGGAGTTTTCCACATGCTATTCTCTAGATCATGGTCACTTGCTGTTGTTTGAATATGTGGGAATTTCTCATTTTCATGTGCACATATTTGATCATAGTGCCCTTGAAATAGACTATCCTTCCCACTTCACTCATGGCAACCCAAAGATTACTGATGCTTGTCGTGATGGAAAGGACATCCTTGTGCAGACAAGTGATGATTTTGTTGAAAGTTTGAATGAGCAAGCTCACGATGGAATGGACAACATCGTGCAGATTAATGATGATTCTAGGGAAATTTTGGATGAGCAATGTAACCGCAAGGCTGAAGTCAAACATACAGCTTCATCTCCTCAACTCTGTAAGAAAATGAAGAATAGTATAACTCCAAATGCTGGAGGAAATCTGAATGGGATAAACTTGCATCAGCATGATCAAACTAAAAGTACTAGTCTTCAAGTGAAGCAAGAATTAGATGAAGAAAAGGGTAAAATCATTGTTCATACTGAATGCCCAAGAGTGGAGCAATTAACTTCCACTGTTTTACAAAGAGCCACAACTTTTAAATCCATACATCCTTTTTTTATGCTTATTATGAAGCCATCCTTGATCAATGGAGATTATCTGGATATTCCCCCACAATTTTCAGAAAAATATTTGAAGAAAAATCATGCAGTTATCCTCCTTGAGGTCATGGATGGGAGAAGTTGGCCTGTAATTTTTTCTGCTTCTAGGATTACTAATGGATGGCAGAAGTTTGCATCGGAAAATCATTTAAATGAGGAGGATGTTTGTGTTTTTGAGCTGATCTTGAAGATCCAGGGTCATGCTTTCAGAGTTTATTTTTTTCGATCTGCAGGAGAACCAAGTGGTCCTATTTCACATGATCATCCAAAATGCAGCAAAATGCTTCTTTCAACTAACTGGACAGGTGAGAGCTCAAGTGAAAGAACTTCACATGTTGAAAGTCACCTAAAGTTGAAGTTCTTAGTGGAGGAGAATCGTAAAGAAGCCAGCAAATTCACATCAGAAAAACCCTTTTTTATGGCCACTCTAAAATTGCAGGGAAACACAACCAGATGCCCGGTGAGGTTTAGTTACGCACTGGGTGTAGAATTTTACAGCATCTTTTCTGCTGGTTGGCCCTTGTTTTCAAGAGAAAATAAACTGGAAGGAGGAGATGTTTGTGTCTTTGAGCTGATCAACAGAGAAGATGTAACACTTGATGTTCATGTTTTCAGAGGTCACACTGAGGTAATGCATTAG 1341 0.39 MSNPVFLKPPDSTEWKIYWTKRDGEMWFQKGWKEFSTCYSLDHGHLLLFEYVGISHFHVHIFDHSALEIDYPSHFTHGNPKITDACRDGKDILVQTSDDFVESLNEQAHDGMDNIVQINDDSREILDEQCNRKAEVKHTASSPQLCKKMKNSITPNAGGNLNGINLHQHDQTKSTSLQVKQELDEEKGKIIVHTECPRVEQLTSTVLQRATTFKSIHPFFMLIMKPSLINGDYLDIPPQFSEKYLKKNHAVILLEVMDGRSWPVIFSASRITNGWQKFASENHLNEEDVCVFELILKIQGHAFRVYFFRSAGEPSGPISHDHPKCSKMLLSTNWTGESSSERTSHVESHLKLKFLVEENRKEASKFTSEKPFFMATLKLQGNTTRCPVRFSYALGVEFYSIFSAGWPLFSRENKLEGGDVCVFELINREDVTLDVHVFRGHTEVMH* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01045 446 Pfam B3 DNA binding domain 219 310 IPR003340 GO:0003677
Lapu2g01045 446 Pfam B3 DNA binding domain 5 64 IPR003340 GO:0003677
Lapu2g01045 446 CDD B3_DNA 218 309 IPR003340 GO:0003677
Lapu2g01045 446 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Lapu2g01045 446 CDD B3_DNA 401 439 IPR003340 GO:0003677
Lapu2g01045 446 SUPERFAMILY DNA-binding pseudobarrel domain 399 439 IPR015300 -
Lapu2g01045 446 ProSiteProfiles B3 DNA-binding domain profile. 402 441 IPR003340 GO:0003677
Lapu2g01045 446 Gene3D - 199 311 IPR015300 -
Lapu2g01045 446 Gene3D - 375 441 IPR015300 -
Lapu2g01045 446 SUPERFAMILY DNA-binding pseudobarrel domain 215 310 IPR015300 -
Lapu2g01045 446 PANTHER B3 DOMAIN-CONTAINING 218 437 - -
Lapu2g01045 446 ProSiteProfiles B3 DNA-binding domain profile. 219 311 IPR003340 GO:0003677
Lapu2g01045 446 Gene3D - 1 66 IPR015300 -
Lapu2g01045 446 CDD B3_DNA 2 63 IPR003340 GO:0003677
Lapu2g01045 446 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Lapu2g01045 446 SMART B3_2 219 311 IPR003340 GO:0003677
Lapu2g01045 446 SMART B3_2 6 65 IPR003340 GO:0003677
Lapu2g01045 446 SMART B3_2 338 441 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01045 Lapu-Chr2 10434464 10436984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01045 377 439 B3 DNA Binding Superfamily AT3G18990 44.444 6.54e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu2g01045 B3 6.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01045 - - ccaj:109791753 491.886