Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu2g01040 | ATGGCCTCATCAGTAGAAAATGCAAGACCAGTTTACTGCTACAGCATGACAACGTTAGGGTTGGATGAGCATATGAGCTACAACGTGTCCATGTCTGGGTCCAATGAGATAAGTACTGTGATTCCTGCTGGTATTTTCAGATTCACCATTAAAGCTTTTCTTGACCATGCACCTAGAGTTCCAATGCTATGTACCCCTTCTACTCCCATACCTAGCCAAACCTTCTTCCAAGAGGGTCACGATTTCTTGCGGACACTGTTATCGCCACTGTCAGCGCGCTCATTCTTCTGCCCTGAAATTATTGAACAAATAATAGACTTGGTTGCTTTTGAAGTTCGAGATCTCTTCCAACTTGATGCTGCGGCTCCTTCTTCTTCGGAATCTCAACCCACAGAAATTCCTTTGTGGGTTGTAATTCGCGTTACTGAGAATGCTGTGTTTGCAGCAACACAAAACTCCGCAACGCTTGGTTTCAGAATGTTTCCGGCAACTAGAAAAGCCATTGAAACGATGTTGAAGAAATCTAGGGTTGTGCGGAGTGAGTATTGTTCCGTATGCTTGGAAGAATTGGTTGTGAATGCTGAGTGCTACAAAATGCCATGTGATCATTTGTTTCATCAAGAATGTATTGTGCGCTGGCTACACACCAGTCACACCTGCCCCTTGTGCCGCTACCCTTTGCTAATCCTAAAAGAGTAG | 699 | 0.4449 | MASSVENARPVYCYSMTTLGLDEHMSYNVSMSGSNEISTVIPAGIFRFTIKAFLDHAPRVPMLCTPSTPIPSQTFFQEGHDFLRTLLSPLSARSFFCPEIIEQIIDLVAFEVRDLFQLDAAAPSSSESQPTEIPLWVVIRVTENAVFAATQNSATLGFRMFPATRKAIETMLKKSRVVRSEYCSVCLEELVVNAECYKMPCDHLFHQECIVRWLHTSHTCPLCRYPLLILKE* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01040 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 183 | 224 | IPR001841 | - | |
| Lapu2g01040 | 232 | SUPERFAMILY | RING/U-box | 168 | 229 | - | - | |
| Lapu2g01040 | 232 | CDD | RING-H2_PA-TM-RING | 183 | 224 | - | - | |
| Lapu2g01040 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 127 | 226 | - | - | |
| Lapu2g01040 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 228 | IPR013083 | - | |
| Lapu2g01040 | 232 | SMART | ring_2 | 183 | 223 | IPR001841 | - | |
| Lapu2g01040 | 232 | Pfam | Ring finger domain | 182 | 224 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu2g01040 | Lapu-Chr2 | 9980293 | 9981078 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu2g01040 | 143 | 227 | C3H Transcription Factor Family | AT1G18760 | 32.955 | 3.04e-13 | 65.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu2g01040 | - | - | vum:124843592 | 250.366 |