Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01032 ATGGGTCTCTGCTTCGCTTCCCTCGCTCCCCACCAAACACCCTCTCATTCTCTTCACCATTGTTCAGGGTCAGGGCGAGAAGGCACAACAACTGTTAATGGAGGAAGCAGTAGCAGCAGTAGCAGCAGTAGCAACAACGTTGTGTTTCCGAGTGTGGAAACGCGGAGCTTGAAGCAGTTCAATTTTGCGGATCTGAAAGCCGCAACCAAGAGTTTCAGGTCTGATGCACTGCTTGGAGAAGGGGGTTTCGGGAAAGTTTACAAAGGATGGTTGCATGAGAAGACACTCACACCAACCAAAGCTGGATCTGGAATGGTGGTTGCTGTTAAGAAACTCAATTCTGAGAGTGTGCAGGGATTTCGGGAGTGGCAGTCAGAAATCAATTTTTTAGGAAGAATTTCTCACCCAAACCTGGTCAAGCTTTTGGGTTACTGTTGTGATGATGTGGAATTTCTACTTGTGTACGAGTTCATGCCTAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATACTAGCACAGAAACATTGTCTTGGAACACCCGACTCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATTCTACTTGATGAGGATTACAATGCAAAAATATCAGATTTTGGTTTGGCCAAATTAGGCCCTTCTGGGGAAAATTCACACGTGACTACCAGAATCATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGCCACCTGTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTAGAAATTCTGACAGGGTTGAGGGCATTTGATAGAAGCCGCCCCTTAGAGCAGCAGAATCTAATTGAATGGGCTAAGCCTTCTCTCTCTGATAAAAGAAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTACTCAACCAAGGCAGCAATGAAAGCAGCACATTTAACTCTAAAATGCCTTGAACGTGACCCTAAAAGACGTCCTCCTATGAAAGATGTTCTGGAAACATTGGAACGCATCGAAACTATCAAGGGTAGAAGGAAATAA 1098 0.4399 MGLCFASLAPHQTPSHSLHHCSGSGREGTTTVNGGSSSSSSSSSNNVVFPSVETRSLKQFNFADLKAATKSFRSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGMVVAVKKLNSESVQGFREWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTSTETLSWNTRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGENSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRAFDRSRPLEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKAAMKAAHLTLKCLERDPKRRPPMKDVLETLERIETIKGRRK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01032 365 CDD STKc_IRAK 78 357 - -
Lapu2g01032 365 Pfam Protein tyrosine and serine/threonine kinase 76 354 IPR001245 GO:0004672|GO:0006468
Lapu2g01032 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Lapu2g01032 365 PANTHER OS01G0588500 PROTEIN-RELATED 38 358 - -
Lapu2g01032 365 Gene3D Phosphorylase Kinase; domain 1 32 157 - -
Lapu2g01032 365 FunFam Serine/threonine-protein kinase PBS1 158 365 - -
Lapu2g01032 365 ProSitePatterns Protein kinases ATP-binding region signature. 78 111 IPR017441 GO:0005524
Lapu2g01032 365 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01032 365 SUPERFAMILY Protein kinase-like (PK-like) 37 354 IPR011009 -
Lapu2g01032 365 Gene3D Transferase(Phosphotransferase) domain 1 158 364 - -
Lapu2g01032 365 FunFam Serine/threonine-protein kinase BIK1 37 157 - -
Lapu2g01032 365 MobiDBLite consensus disorder prediction 10 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01032 Lapu-Chr2 9874356 9877618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01032 24 354 Glycoside Hydrolase AT3G07070 46.246 3.34e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu2g01032 PK_Tyr_Ser-Thr 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01032 - - gmx:100777578 633.254