Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01031 ATGAGGAACTTGAAGGAGTTTAGTTTCGCGGAGCTGAAAGCAGCTACCAAGAGTTTCAAGTTGGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAGGTTTACAAAGGATGGTTGCATGAGAAAACTCTGACACCGACAAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCATTCGAGAGTGGCAGTCAGAAATCACTTTTTTAGGAACAGTTTCTCACCCAAACCTGGTCAAGCTTTTGGGTTACTGCTGTGACGATATGGAGTTTCTCCTTGTGTATGAATTCATGCCAAAGGGAAGCTTGGAGAATCATATATTTTGGAGAAATACTAACACAGAACCACTGTCTTGGGACACTCGACTCAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTACTTGCACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCTAACATACTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAATTAGGCCCTTCTGCGGGAGATTCGCACGTGAGTACCAGGATAATGGGAACACATGGTTATGCTGCTCCAGAATACATTGCAACAGGCCACCTTTATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTAAAAGGGATGCAGGCATTTGATAGAAACCGCCCTTCAGGGCAGCAGAATCTGATTGAATGGATTAAGCCTTCTCTCTCTCATAAAACCAAGTTGAAAAGTGATATTATGGATGAAAGGATTGAGGGTCAGTATTCAGCGAAGGCAGCACTGAAAGCAGCACAGCTTACTCTGAAGTGCCTTGAAACTGACCCTAAAAACCGTCCTTCTATGAAAGAAGTTCTTGACACATTGGAAAGCATCCAAGCTATCAAGGTTAGAGGGAGGAAAAGAAGGAACAATATTCCACGTTAG 966 0.4317 MRNLKEFSFAELKAATKSFKLDALLGEGGFGKVYKGWLHEKTLTPTKAGSGIMVAIKKLNPESMQGIREWQSEITFLGTVSHPNLVKLLGYCCDDMEFLLVYEFMPKGSLENHIFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSEKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVSTRIMGTHGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMQAFDRNRPSGQQNLIEWIKPSLSHKTKLKSDIMDERIEGQYSAKAALKAAQLTLKCLETDPKNRPSMKEVLDTLESIQAIKVRGRKRRNNIPR* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01031 321 Gene3D Phosphorylase Kinase; domain 1 3 104 - -
Lapu2g01031 321 CDD STKc_IRAK 25 305 - -
Lapu2g01031 321 FunFam Serine/threonine-protein kinase BIK1 1 104 - -
Lapu2g01031 321 PIRSF ILK 32 318 - -
Lapu2g01031 321 ProSiteProfiles Protein kinase domain profile. 19 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01031 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lapu2g01031 321 Pfam Protein tyrosine and serine/threonine kinase 20 302 IPR001245 GO:0004672|GO:0006468
Lapu2g01031 321 PANTHER OS01G0588500 PROTEIN-RELATED 3 306 - -
Lapu2g01031 321 Gene3D Transferase(Phosphotransferase) domain 1 105 318 - -
Lapu2g01031 321 SUPERFAMILY Protein kinase-like (PK-like) 4 307 IPR011009 -
Lapu2g01031 321 ProSitePatterns Protein kinases ATP-binding region signature. 25 58 IPR017441 GO:0005524
Lapu2g01031 321 FunFam Serine/threonine-protein kinase PBS1 105 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01031 Lapu-Chr2 9863998 9867097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01031 7 302 Glycoside Hydrolase AT3G07070 48.822 4.06e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu2g01031 PK_Tyr_Ser-Thr 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01031 - - gmx:100778116 546.199