Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01030 ATGGATTCCTCGCAGACCAACAATACCACTTTGCTCACCAACCTACTAGTTTTCAACAACACCGTCCAACCAGAGTTGATGAGGAGCGTGCATGTGTACCGGCCAGGGGATGAGGAGGAAAGAGCAGTTGAGAGGGAGTTTGTGTTTTCAGAGTGTGGCTCCTATTGGGAAATGCAGGCTACCCCAACTCTCAGATTGGTGAAATCCCATGTTTCTCAAGTGTGCGAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCCGATCACTCTCCTCAATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGATTCCAAACTTGCTCCATGATCTCCACATGATATACAAGTTTGACAAGAAGGAAGAAAACAAAGACACAACTCTAAGCTCTACAGGGGAAGAAAGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCTGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGACGAGTCTGAGTTACTGGACAATGAGACAGATGTTGAAAGCTCACCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTTGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATACCCCGCTGGCCTCATAGGAAGATCAAGTCACTAGACAGTCTCATTCATGATCTTGAGGAAGAGGCAAAGAACCAAGAACTGGAGGACATGGAAGCAGCAATGGCAGTGGCAAAGAGACAAAGGCTGTTGGAGAGTGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATTCAAACTGAGACCAAGAGATTCAGGCAAGATGTCTTCAAGAGAAGACACAGAGCTAGAGTTGTTGGAAAACAGAATTCTACAGTATCCAACACATAG 999 0.4394 MDSSQTNNTTLLTNLLVFNNTVQPELMRSVHVYRPGDEEERAVEREFVFSECGSYWEMQATPTLRLVKSHVSQVCEGYKNGVWLCIFAFHADHSPQFCRIPPLLLVSRNPKLQMIPNLLHDLHMIYKFDKKEENKDTTLSSTGEESQGNSNNFQPSEKVFPVLDQDLNYLPYEEDESELLDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLEEEAKNQELEDMEAAMAVAKRQRLLESEKENIEKKPFMDIQTETKRFRQDVFKRRHRARVVGKQNSTVSNT* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01030 332 ProSiteProfiles RWP-RK domain profile. 189 274 IPR003035 -
Lapu2g01030 332 MobiDBLite consensus disorder prediction 176 195 - -
Lapu2g01030 332 MobiDBLite consensus disorder prediction 136 156 - -
Lapu2g01030 332 Coils Coil 251 283 - -
Lapu2g01030 332 MobiDBLite consensus disorder prediction 140 156 - -
Lapu2g01030 332 PANTHER PROTEIN RKD4 25 324 IPR044607 GO:0003700
Lapu2g01030 332 Pfam RWP-RK domain 207 254 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01030 Lapu-Chr2 9853496 9858682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01030 22 332 AtRKD Transcription Factor Family AT4G35590 47.546 5.44e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu2g01030 RWP-RK 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01030 - - gmx:113001653 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01030 2 9853496 9858682 Lapu2g01030 2 9853496 9858682 ECH