Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01019 ATGTCGTGTTCGTCGTCATCGGGGTCGGAGGAAGACGATGAGGGATTTGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGGCGGCGGCAGGTACATAGCACAGAGGAAATTGGGTTGGGGTCAGTTCTCCACCGTCTGGCTTGCTTACGATACTAAAACTTCTGAATCTATACATGTTGGTGTAATGGGAAACGATTGTGGTTTTCAGTCATTTGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCAGCCATAGCTGACCATGACCCATCAAATTCAAAATTTGTAATTCAATTGATTGACAACTTTAAGCACACTGGTCCAAATGGGCAGCATCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGCTTGATCAGATATAACCGTTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCAAATGCGTTTTGATTGGTTTGGACTACTTGCATACTGATCTTGGTATAATTCACTCTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCTGGAGTCTCCCCAATTCTAGAGCGGCCTGAGGGAAACACAAATGGTGGAGTAACAAGTCTTATTGAGAAAAGATTGAAAAGGAGAGCAAGGTCGGCAGTTGCTAAGATATCCGGAAGAAGAGGGTCAATGGGAAGTACAGGAGATGTTGCAAAGACTGATAGAAATATTAATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCCTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCACCTGAAGTTATACTGATATCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTAGCCACTGGAGATATGTTGTTTACACCAAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATCCGAAGGCTAAAATTTTGTCCACTAGACAAATTGCTGACTGATAGATATAAATTTTCAGTTAATGATGCTCAAGGGTTTTCAGAATTTCTTCTACCACTCTTTGATTTTGCTCCGGAGAAGCGACCGACTGCACGACAGTGTCTGCAACATCCATGGCTGAACTGCATGGAGTCCCCTCCAAATGAAACTGCGGAGGGAAAAGTGGTTGTTGGGATGAGCAACCTTGAAATCAGCGTGGGAAAGTGA 1371 0.4391 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFGGGRYIAQRKLGWGQFSTVWLAYDTKTSESIHVGVMGNDCGFQSFVALKIQKSAAQFVQAALHEIDILSAIADHDPSNSKFVIQLIDNFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCVLIGLDYLHTDLGIIHSDLKPENILLCSTIDPAKDPLRSGVSPILERPEGNTNGGVTSLIEKRLKRRARSAVAKISGRRGSMGSTGDVAKTDRNINGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILISGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGAQSKDFFDRHGDLKRIRRLKFCPLDKLLTDRYKFSVNDAQGFSEFLLPLFDFAPEKRPTARQCLQHPWLNCMESPPNETAEGKVVVGMSNLEISVGK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01019 456 CDD STKc_SRPK 27 428 - -
Lapu2g01019 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lapu2g01019 456 Gene3D Transferase(Phosphotransferase) domain 1 107 428 - -
Lapu2g01019 456 Gene3D Phosphorylase Kinase; domain 1 24 138 - -
Lapu2g01019 456 Pfam Protein kinase domain 40 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01019 456 Pfam Protein kinase domain 267 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01019 456 SUPERFAMILY Protein kinase-like (PK-like) 34 436 IPR011009 -
Lapu2g01019 456 SMART serkin_6 38 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01019 456 FunFam Serine/threonine-protein kinase SRPK 132 428 - -
Lapu2g01019 456 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 249 431 - -
Lapu2g01019 456 ProSiteProfiles Protein kinase domain profile. 38 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01019 Lapu-Chr2 9597718 9602415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01019 4 429 EF-hand Containing Proteins AT5G22840 49.372 1.36e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lapu2g01019 Pkinase 9.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01019 K08832 - gmx:100784192 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01019 2 9597718 9602415 Lapu2g01019 2 9597718 9602415 ECH