Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01015 ATGATTAAAGTTTGGCCCTTTATTTTAATGGTTCTCTCCATTGGATTCTTTTCAAATGGGGATGACAGGCAAAATAGCACAGTACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACCAGTGTTGGTAGAGCTGTAAAAATTGCATTAGAAGCTGCGTTTGAAGATGTAAATTCTGATCCAACTATTCTTGGTAAAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACAGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACCCATATTGCAAATGAGCTCCAAGTTCCTCTTCTGTCATTTTCAGCTTTGGACCCTACTCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGTCATAGTGATCTTTATCAAATGATTGCAATAGCTGACCTTGTTGACCACTATGGCTGGAAAGATGTTATCGCAGTCTACCCTGATGATGATAATGGGAGAAATGGAATTAGCGCATTAGGTGATAAGCTTGCGGAGAGGCGTTGCAAGATATCGTATAAAGCAGCTATGAGCCCCCAAGCATCTATGGAAGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCCAATACTCAAATTGGCCCCAAGGTGTTTACAGTTGCAAAGAATCTAGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTGTTTTCCTCTCGGCTATGCTTGACATCAACTATCCCCTTCCTCCCGATTCAATGGATGAAATTCAGGGAGTTCTTACACCGCGTATCTACACGCCAGATTCACAGCGCAGAAGGACTTTTGTTTCTAGGTGGAATAACTTGACTAGTGGAAATACTGCTAATGTCCAACTTGGATTGAGTTTCTTAGCTCTCTACGCATATGACACTGTTTATGTACTTGCTCGTGCTCTTGATGCATTTTTCAAAGAAGGTAACCGAATTACATTCTCAACTGATTCAAAGCTATCTGACATACGTGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATCTGTTACGTAATAACATCTATGAGGTAAACATGATTGGTGTATCAGGTCCATTCAAGTATACATCTGATAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTGGTTGGAACAGGAACTCGGAGGATTGGTTATTGGTCTAATTACTCTGGCTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGCCAACCTTGCCAGGAAAAATCAAAAGCTGTTCCCCGTGATTTGGCCTGGAAACACAGATGAGAAACCTCGGGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGCTACCAAGAATTTGTCTCACAGATAAAAGGCACTGATATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCGGTGAACCTGTTGCCTTATGCTGTCCCCTATAAGTTCATCACATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGACTGATCACAACGGGTGAATTTGATGGTGCAGTAGGGGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTGGTAGCACCCATTGGGAAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTGTGTCACGGCTGTCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGAGAAAATACAGTGAGCACACTTGGTCGTGCTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTCTCCCATTAAAGGCATTGAAAGTCTTGTAAATAGCAAAGAGCCTATCGGCTACACGCAGGGTTCTTTTGCAAAAGACTATTTAGTTCAGGAAATTCAGATTGAGGAGTCCAGGCTAGTTCCTCTAAAAACACCAGAAGAAGCTGCTAAAGCACTGAAAAATGGTCCCAAAAATGGTGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTCTCCAGCCGTTGTGATTTAACTGTCGTAGGTCAGGAGTTCACAAGAAATGGTTGGGGATTTGCCTTTCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCTATATTGCAAATGATAGATAGTGGAGATTTACAGAGGATACATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGGCTAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTCTGGGGCCTCTATGCGATCTGTGGACTTGCCTGCTTGCTTGCACTCTTCCTGTATCTTATACAGATTTGGAGGCAATACCACAAGCACTACACAGAAGAACCTGAGTCCACTGGCGGCCAAAGCTTTGGATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTTAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGGTCTCATACAGAAGCAGTGAAGGAAGCTCATCCATAAACTCTAATAAGGGATATGCTTCACGCAGAAGTGAATATGGTAGTGAAGTATTATGA 2817 0.4192 MIKVWPFILMVLSIGFFSNGDDRQNSTVPDFVNIGALFSFNTSVGRAVKIALEAAFEDVNSDPTILGKTKLNLSLQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMIAIADLVDHYGWKDVIAVYPDDDNGRNGISALGDKLAERRCKISYKAAMSPQASMEEITNVLVQVALAESRVIVVHANTQIGPKVFTVAKNLGMMGTGYVWIATVFLSAMLDINYPLPPDSMDEIQGVLTPRIYTPDSQRRRTFVSRWNNLTSGNTANVQLGLSFLALYAYDTVYVLARALDAFFKEGNRITFSTDSKLSDIRGNNLNLEALKIFNEGNLLRNNIYEVNMIGVSGPFKYTSDRNLVNPAYEIINVVGTGTRRIGYWSNYSGLSVVPPETLYSKPANLARKNQKLFPVIWPGNTDEKPRGWVFPNNGRLLKIGVPRGVSYQEFVSQIKGTDMFEGFCIDVFLAAVNLLPYAVPYKFITYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGKAESNALAFLAPFTPKMWCVTAVFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRAVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKEPIGYTQGSFAKDYLVQEIQIEESRLVPLKTPEEAAKALKNGPKNGGVAAYIDERAYTDIFLSSRCDLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDSGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYAICGLACLLALFLYLIQIWRQYHKHYTEEPESTGGQSFGSRSSRLKTFLSFADEKEETVKSRSKRRKMERVSYRSSEGSSSINSNKGYASRRSEYGSEVL* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01015 938 Gene3D - 759 819 - -
Lapu2g01015 938 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
Lapu2g01015 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Lapu2g01015 938 FunFam Glutamate receptor 583 713 - -
Lapu2g01015 938 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Lapu2g01015 938 FunFam Glutamate receptor 467 583 - -
Lapu2g01015 938 MobiDBLite consensus disorder prediction 891 938 - -
Lapu2g01015 938 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Lapu2g01015 938 CDD GluR_Plant 472 812 - -
Lapu2g01015 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 891 IPR015683 -
Lapu2g01015 938 PIRSF IGluLR_plant 1 936 IPR017103 -
Lapu2g01015 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Lapu2g01015 938 Gene3D - 148 425 - -
Lapu2g01015 938 MobiDBLite consensus disorder prediction 912 929 - -
Lapu2g01015 938 FunFam Glutamate receptor 148 303 - -
Lapu2g01015 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Lapu2g01015 938 Gene3D - 465 582 - -
Lapu2g01015 938 FunFam Glutamate receptor 709 816 - -
Lapu2g01015 938 Gene3D - 50 400 - -
Lapu2g01015 938 Gene3D - 583 716 - -
Lapu2g01015 938 Pfam Receptor family ligand binding region 49 410 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01015 Lapu-Chr2 9566095 9571305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01015 5 921 Ion Channels AT3G51480 57.081 0.0 1108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01015 K05387 - gmx:100793320 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01015 2 9566095 9571305 Lapu2g01015 2 9566095 9571305 ECH