Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01010 ATGACGCGCGCACTCAGATTTCTCAATTCTCCCAACAACGCCACCGCGGTCGCAGCGGCGGCTCCACCGCCGGAGGCGGTGGCCCTCGAGTCCGATTTCGTGGTGATTCTGGCGGCTCTCCTGTGCGCTTTAATCTGCGTGGTGGGACTCGTGGCCGTGGCGCGGTGCGCGTGGCTCCGGCGAGGGCCCGGCGCCGGAAACTCGCCGCGGCAGGCGGTGGTGAACAAGGGCCTGAAGAAGAAGGTGCTGCAGTCGCTGCCCAAGTTCGCATACATGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGCGATTTGCCTGGGTGATTTCGCCGCCGGCGACGAGATTCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTCTCCTGCATCGACAGGTGGCTGGGGTCCCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCCTTCCCGCCAGCGCCGCCGGAGCTTCCAGAAGCGGCGCCAGCGAACCCGAATTGAAGTCTAGAGAAGACAACAATGCCGCTTCAATCGGTAATTGCAATAATAACAACGGTGATGGCGGTGGAAGTGGTGATAACGTGAATCATCATCACAGCCACCATGTGAACAGTGGGTTCTTGCCCTGA 663 0.632 MTRALRFLNSPNNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGAGNSPRQAVVNKGLKKKVLQSLPKFAYMDSNPSKWVATSECAICLGDFAAGDEIRVLPQCGHGFHVSCIDRWLGSHSSCPSCRQVLAVARCQKCGRLPASAAGASRSGASEPELKSREDNNAASIGNCNNNNGDGGGSGDNVNHHHSHHVNSGFLP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01010 220 CDD RING-H2_EL5-like 104 147 - -
Lapu2g01010 220 SMART ring_2 105 146 IPR001841 -
Lapu2g01010 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Lapu2g01010 220 MobiDBLite consensus disorder prediction 164 220 - -
Lapu2g01010 220 Pfam Ring finger domain 104 147 IPR001841 -
Lapu2g01010 220 MobiDBLite consensus disorder prediction 184 202 - -
Lapu2g01010 220 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Lapu2g01010 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 159 - -
Lapu2g01010 220 SUPERFAMILY RING/U-box 83 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01010 Lapu-Chr2 9510363 9511385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01010 1 183 C3H Transcription Factor Family AT1G76410 56.545 1.24e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01010 - - vun:114170353 337.806