Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01001 ATGAGTGATGCAAAAGAAAACAAAGAGTCTGGCCTGGGCGAGCCCTCGGCTGCGGAAGAGAACCAGCTGTTGGTTGATGCAAAGGATCAAGTTCAGCCTGAAGCTGCCTCTGCTCCTGTTCCAGTAGAGGAAACGTCAAACCTTGTTGAAAGTGGGTCAAATCATGCTGAAAATAAGAAGGAAGAGCCACCCGCTGAGCATAAAAATGTAGAACTTGAGGTAGTTTCAGAAGGAATTCAACAAGTGGATGGTCAAAATACTCCTCACTCTGTCCCAGTAGAGGCTCATACTCAGATTTTGGATACGACTGAGTGTGAAGAAACTTCTAATGCGAAGGAGGAAGCTGAAGAATTTCCCACAAGTGATAAGAAGGTTGAGAATACTGATGATATTCGTCAAAATAATATTGATGATGTTGAAATAGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGGTTGACTCTAAAACTTGTGACAATGGTGACTCTATGTCTGCAAGTCATAATGAGGCTGCTGTATCACAAACTGCTCCTGCTGATACAAACACTGAATTTGTGAATGTATTAGAAGTTGAGAACAAGACTGATGAAAAGCAAGCTACTGATCCTGCAGATAATGGGAATTCAAACTCAAAGCACTTGCTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCTAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACTGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGAAATAAAATAAAAGGTGGTGAGCTAAATGTGCCAATTTCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGACTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCTCAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAACCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCGCAATTGGACACAACTGTGATTGATATAGGACCTCCTGCTGATTGGGTGAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCCAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCGGCAGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCAGAATAG 1584 0.4369 MSDAKENKESGLGEPSAAEENQLLVDAKDQVQPEAASAPVPVEETSNLVESGSNHAENKKEEPPAEHKNVELEVVSEGIQQVDGQNTPHSVPVEAHTQILDTTECEETSNAKEEAEEFPTSDKKVENTDDIRQNNIDDVEIAVEVKPEGCGVVDSKTCDNGDSMSASHNEAAVSQTAPADTNTEFVNVLEVENKTDEKQATDPADNGNSNSKHLLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERNKIKGGELNVPISSHPEPINIENQTSASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFQKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01001 527 FunFam AT-rich interactive domain-containing protein 3 419 527 - -
Lapu2g01001 527 CDD ACD_sHsps-like 442 522 - -
Lapu2g01001 527 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 427 527 IPR002068 -
Lapu2g01001 527 MobiDBLite consensus disorder prediction 54 70 - -
Lapu2g01001 527 Pfam Hsp20/alpha crystallin family 444 526 IPR002068 -
Lapu2g01001 527 CDD ARID 233 318 - -
Lapu2g01001 527 Gene3D - 231 328 IPR036431 GO:0003677
Lapu2g01001 527 SUPERFAMILY ARID-like 226 334 IPR036431 GO:0003677
Lapu2g01001 527 Gene3D - 429 527 IPR008978 -
Lapu2g01001 527 SMART ARID_2 228 318 - -
Lapu2g01001 527 MobiDBLite consensus disorder prediction 1 70 - -
Lapu2g01001 527 MobiDBLite consensus disorder prediction 106 139 - -
Lapu2g01001 527 SMART bright_3 232 323 IPR001606 GO:0003677
Lapu2g01001 527 MobiDBLite consensus disorder prediction 99 139 - -
Lapu2g01001 527 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 64 526 IPR045147 GO:0006357
Lapu2g01001 527 SUPERFAMILY HSP20-like chaperones 436 523 IPR008978 -
Lapu2g01001 527 FunFam AT-rich interactive domain-containing protein 3 231 330 - -
Lapu2g01001 527 Pfam ARID/BRIGHT DNA binding domain 234 318 IPR001606 GO:0003677
Lapu2g01001 527 ProSiteProfiles ARID domain profile. 231 322 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01001 Lapu-Chr2 9364587 9372171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01001 212 525 ARID Transcription Factor Family AT1G76510 62.382 5.24e-129 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu2g01001 HSP20 2.1e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01001 - - gmx:100791081 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01001 2 9364587 9372171 Lapu2g01001 2 9364587 9372171 ECH