Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00999 ATGGAGTTTGAGCCTTTGAGTCTAAGCAACGAGGTTATTGAATTTGATATGATTGGTTTGGGGTATGATGCTACCATTGACATGGAGCACCCTGTTGAGGATGATGAGGACCTTGTTAATATTGATTATAGTCCAGCTGCTGCTAATTCTGTTCTTGCTGCCGGTGTGGGACCTCACATTTTTGGAGGGGACACTAATCTTGAACCTTGTCAAGGTATGGACTTTGAATCGGAAGAGGCTGCAAAGGCCTTCTATAATTCCTATGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGACGCTCCAGACGTGACGGTTCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAGGAGAAGCATTTGGTTGATGGCAGAGTCAAGCGGCCACGTGCCGAAAGCCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCATTTGTCAAAGAACATAATCATGATTTGGTTCCTCCTGACAAGGTGCATTGCCTTCGTTCTCATCGCCATGTTTCGGGTCCAGCTAAGTCATTGATTGATACTTTGCAGAGTGCTGGAATAGGCCCTAGTGGAATAATGTCTGCACTGATAAAAGAATACGGTGGAATTAGCAATATTGGATTCACTGAGCGTGACTGTAGGAATTATATGAGAAGTAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGATTACTTGAAGAGCAAACAAGCAGAGAATCCTTCATATTTCTATGATGTACAAGGTGACGAAGATCACTGCATGAGTAATATCCTCTGGGTTGATCCCAAGGCTAGGACTAATTATACTTACTTCGGAGACACTGTCACCTTTGACACAACATATAGGTCAAACCGCTATAGATTACCTTTTGCACCTTTCACTGGCATAAATCATCATGGACAGCCTGTATTATTTGGTTGCGCACTCCTGATAAATGAATCCGAGGCATCTTTTGTCTGGCTTTTCAAAACCTGGCTTGAAGCAATGTTGGGTAGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATCAGTGCAGCCATCAACCATGTATTTCCTGGTACCCGTCACCGATTTTGTAAGTGGCACATTTTTAAAGAGTGCCAAGAGAAGTTGTCTCATGTTCCTGAACATCATAATTTTGAAGCTGACCTGCATAAATGCATTAACCTTACCGAGTCCATCGAGGAGTTTGAGTCTTGTTGGTCCTGTCTAATTGATAGGTATGATCTCAAGAAACATGAATGGCTCCAAGCAATTTACGGTGATAGGCGACAGTGGGTACCAGTGTACTTGAGGGACACATTTTTTGCAGAAATGTCAATAACACAGCGAAGTGATAGCATAAACTCTTATTTTGATGGATATATCAATGCATCAACGACACTTCAGTTTTTTGTCAAGCAGTATGAGAAGGCTCTGGAGAGCCGTTTTGAGAAAGAAGTCAAAGCTGACTATGACACAATTAACACTACTCCAATTCTGAAGACTCCATCACCTATGGAGAAACAGACAGCGGGAGTTTACACAAGGAGGTTGTTTACCAAATTTCAAGAAGAGTTGGTTGAGACATTAACATTCTTGGCAAACAGAGTAGATGAAGAAGAAATGATTACCGTGTATAGAGTAGCCAAATATGGGGAAATGCACCGGGCTTACGTTGTTAACTTTAATTCGTTTGAGATGAAAGCTACTTGTAGCTGCCAGATGTTTGAGTTTTCTGGTCTAGTTTGTAGACATATATTGACTGTTTTCAGGGTGACAAACCTTCTTACTTTACCATCTCATTATATTTTAAAAAGATGGACTAGGATTGCTAGAAGTGGTGTCATATTGGATGAACGTACTACTAATTTGTCAAATGGTACCCTCGAATCTCTAACCATCCGAGTCAACAATCTTCGTCACCAGGCCCTTAAATATGTTGATGAGGGAGTAACCTCTTCGGAAGTTTATGATGTAGCAATAAGTGCACTTCGGGAGGCTGCAAATAAAGTAGCATTTGCAACAAAAAATGGTGGAAGACAGGTTACTTCAAACGGAACTTGTAAAAAAGACCTTCATCAGAGCAATGAAGCTACTACAAGTCGTAGTGAACCTCCATTTGGTTCACAACAATCTTCATATAAGGATGACCAAGATAGAACAATTGAGAAGTTGACACGGCAACTTGACCGAGCTCGAAGGAAATGTGAAGTTTATAGGTCCAACTTGCTGACAATTTTAAAAGATATTGAAGAGCAGAAGCTACAGTTATCAGTTAAAGTCCAAAACATAAAGTTGGGAATGAAAGAGTGA 2364 0.415 MEFEPLSLSNEVIEFDMIGLGYDATIDMEHPVEDDEDLVNIDYSPAAANSVLAAGVGPHIFGGDTNLEPCQGMDFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEKEKHLVDGRVKRPRAESRVGCKAMLVVKIQDSGRWVVSSFVKEHNHDLVPPDKVHCLRSHRHVSGPAKSLIDTLQSAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSYFYDVQGDEDHCMSNILWVDPKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGINHHGQPVLFGCALLINESEASFVWLFKTWLEAMLGRPPVSITTDHDRVISAAINHVFPGTRHRFCKWHIFKECQEKLSHVPEHHNFEADLHKCINLTESIEEFESCWSCLIDRYDLKKHEWLQAIYGDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQFFVKQYEKALESRFEKEVKADYDTINTTPILKTPSPMEKQTAGVYTRRLFTKFQEELVETLTFLANRVDEEEMITVYRVAKYGEMHRAYVVNFNSFEMKATCSCQMFEFSGLVCRHILTVFRVTNLLTLPSHYILKRWTRIARSGVILDERTTNLSNGTLESLTIRVNNLRHQALKYVDEGVTSSEVYDVAISALREAANKVAFATKNGGRQVTSNGTCKKDLHQSNEATTSRSEPPFGSQQSSYKDDQDRTIEKLTRQLDRARRKCEVYRSNLLTILKDIEEQKLQLSVKVQNIKLGMKE* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00999 787 Coils Coil 732 759 - -
Lapu2g00999 787 MobiDBLite consensus disorder prediction 701 737 - -
Lapu2g00999 787 MobiDBLite consensus disorder prediction 701 732 - -
Lapu2g00999 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 689 IPR031052 GO:0006355
Lapu2g00999 787 SMART 26again6 586 613 IPR006564 GO:0008270
Lapu2g00999 787 Pfam MULE transposase domain 296 388 IPR018289 -
Lapu2g00999 787 Pfam FAR1 DNA-binding domain 84 175 IPR004330 -
Lapu2g00999 787 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Lapu2g00999 787 Pfam SWIM zinc finger 583 609 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00999 Lapu-Chr2 9345674 9350213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu2g00999 MULE 4.9e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00999 - - gmx:100782414 1417.91