Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00962 ATGAAACATTTGTCTCTTCTGTTACTTGGATTTTGGTCTATATATGTTCAACTGTTTTCTCTCTTTACATTAAGCTCACTATGCTTTATTCCAATTGTATCTGCCATTTCATCAGGAAATGAGACTGATCATTTGGCACTGCTCAAATTCAAGAAATCTATATCCAGAGACCCATATGGAATCTTACTTTCTTGGAATACTTCTACTCACTTTTGTAGCTGGCCGGGAATAACATGCAATCTCAAGCTTCAAAGAGTTATACAGTTAAACTTGTCAAGCTACAAGTTGGAGGGATCCATACCTCCCCACATAGGAAATCTCTCTTATTTGATCAACTTCAATCTGGCAAGCAACAACATCCACGGGAAAATACCACAGGAATTGGGACGGTTGTCACGTCTGCAACAACTATCTGTCCCAAACAACTCATTGGTAGGAGAAATTCCTACAAACTTGACTGGATGCACTGATCTCAGATTCTTATATATAAACAGGAACACTCTGACTGGCAAAATACCAATCGAAATTGGCTCACTTGGAAAGCTTGAACGTTGGAGTGTTTCTGTTAACAAGTTAACAGGAGAAATCCCACCATCCATAGGTAATCTTTCATCCCTCACACATCTCGGTGTCGGTACAAACAACTTCGAGGGACATATTCCACAGGAAATATGCCGTCTCAAAAACTTGACATTTTTATCATTTGGTGTCAACAAACTCACTGGAACATTTCCTTCATGTCTTTATAATATGTCATCTCTCGCCATGATCTCAGCCCCAGAAAATCAATTAAATGGCTCTCTTTCACCCAACATGTTCCACACCCTCCCCAATCTCCAAGAACTTTACATTGGTAACAATCAAATCTCTGGTCCAATCCCACCTTCCATCATCAATGCATCTATTTTCTTTTTAGCACTTGATGTCCGTCAAAACAGTCTTACGGGACAAATTCCAAGCATGGGAAAGTTTCAATATCTTGATCTCCTATCTCTGTCTTGGAACAATCTAGGTGACAATTCAACTAATGATTTGGATTTTCTGAAAACATTGAGTAACTGTAGTCAGCTGCACCTGTTGTCCATATCCTACAATAATTTTGGAGGTCATTTGCCAAATTCCTTGGGAAATTTATCCACCCAACTCAGTCAATTATATCTGGGAGGTAATCAGATATCAGGGGAAATCCCTGCAACAATAGGAGATTTAATCGGCTTAACTCTCTTGACTATGGAAAACAACAACCTTGGTGGGAATATCCCAAAAACTTTTGGGAAGTTTCAAAAACTGCAGAAGTTAAATTTGGGTGCAAACAAGCTGTCAGGAGAGTTAAGAGCCTACATAGGCAACCTTACTCAATTGTTTCATTTGGAATTAGAAGATAATTTGTTTGAAGGGAATATTCCTCCAAGTATTGGAAACTGCCAGAACTTACAGTACTTAGACCTTTCAGATAACAATCTTACAGGAACCATACCCTTGGACCTTTTCAAGCTTTCATCTCTAACAAACTTGTTGAATTTGTCACTAAACTCACTGAGTGGCAGTATACCTGAAGAAGTAGGCAGCCTAATAAATCTTGGTTGGCTAGATATGTCTGAGAATCACATGTCCGGGGAAATTCCTCCAACCATGGGAGAATGCATAATGTTGGAATACCTATATTTACAAGGGAATTCTTTACAGGGAATCATACCATCCTCTTTGGGATCAATCAAAGGGCTTCAACGTTTAGACCTGTCACGAAATGGATTGTCTGGATCAATTCCTAATGTTCTAGAAAACATATCCTTGAAATATTTCAATCTATCCTTTAACAAGTTGGAGGGTGAAGTACCAACCAAAGGTATCTTTGGAAGTGCAAGTGGGATACTGGTTATGGGAAACAACAAACTTTGTGGGGGAACTTCAGAACTGCATCTACCACCTTGTCCCGTCAAAGGTAAGAAACATGCAAAGCACCACAAGTTCAGGTTGATAGCAGTGATAGTTAGTGTGATTGCTTTTTTTCTCATATTGTCAATTATTCTAACTATTTACTGGACAAGGAAAAGGAGTAAGAAAACATCTTTGGATTCACCAACGATTGATCAGTTGGCTACAGTCTCCTATCAAAGCCTACACAAGGGAACTGATGGGTTCTTAGCTACAAACTTGATAGGTTCTGGAAATTTTAGCTCTGTTTACAAAGGAACTCTTGAGGAGTTAAAAGACAAAGTTGTTGCCATAAAGGTCCTAGACCTTCAGAAGAAGGGAGCTCACAAGAGTTTTATTGCCGAATGCAACGCACTTAGAAATATTAAACATCGAAATTTGGTTCAGATTTTGACATGTTGTTCCAGCATAGATTACAAAGGTCAAGAATTCAAAGCTCTAATTTTTCAGTACATGACAAATGGAAGCTTAGAGCAATGGCTGCATCCTAAGACACTAAGTACAGAGCATCCCAGAATATTGAGCCTTGATCAAAGATTAAATATCATGGTCGATGTTGCTTCTGCATTACATTATCTTCATCATGAGTGCGAGCAATCAATAATTCATTGTGATTTAAAGCCAAGTAATGTCCTTCTCGACAATGAGATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAAACTTCTCTCAACCATCAATGATACCATTTCTAAACAAACAAGTACAACAATTGGAATAAAGGGGACTATTGGCTATGTTCCTCCAGAGTATGGAGTGAGTTCTGAAGTATCAACTTGCGGTGACATATACAGCTTTGGGATTCTTATGTTGGAAATGCTTACAGGAAGAAGTCCCACAGATGAAATGTTTGAAGATGGTCAAAATCTTCGTAACTTTGTTATAACTTTATTTCCTGATAATCTTTTGCAAATTTTGGATCCACGACTTATTCCATCAGATGAAGCACCAATATCGAGAGGAAACAATTGGAATCTTGATCCAAATGTTGAGATGTGCCTAGTATCCCTTTTTAGGATTGGACTTTCTTGTACTAGGGAATCACCAAAAGATAGAATGGATATTGCAGATGTCACTAGGGAGCTTAACCGAATCAGTGAGACCTTTCTTGGTGGTGTGGAAACTTCAAAATAA 3090 0.3851 MKHLSLLLLGFWSIYVQLFSLFTLSSLCFIPIVSAISSGNETDHLALLKFKKSISRDPYGILLSWNTSTHFCSWPGITCNLKLQRVIQLNLSSYKLEGSIPPHIGNLSYLINFNLASNNIHGKIPQELGRLSRLQQLSVPNNSLVGEIPTNLTGCTDLRFLYINRNTLTGKIPIEIGSLGKLERWSVSVNKLTGEIPPSIGNLSSLTHLGVGTNNFEGHIPQEICRLKNLTFLSFGVNKLTGTFPSCLYNMSSLAMISAPENQLNGSLSPNMFHTLPNLQELYIGNNQISGPIPPSIINASIFFLALDVRQNSLTGQIPSMGKFQYLDLLSLSWNNLGDNSTNDLDFLKTLSNCSQLHLLSISYNNFGGHLPNSLGNLSTQLSQLYLGGNQISGEIPATIGDLIGLTLLTMENNNLGGNIPKTFGKFQKLQKLNLGANKLSGELRAYIGNLTQLFHLELEDNLFEGNIPPSIGNCQNLQYLDLSDNNLTGTIPLDLFKLSSLTNLLNLSLNSLSGSIPEEVGSLINLGWLDMSENHMSGEIPPTMGECIMLEYLYLQGNSLQGIIPSSLGSIKGLQRLDLSRNGLSGSIPNVLENISLKYFNLSFNKLEGEVPTKGIFGSASGILVMGNNKLCGGTSELHLPPCPVKGKKHAKHHKFRLIAVIVSVIAFFLILSIILTIYWTRKRSKKTSLDSPTIDQLATVSYQSLHKGTDGFLATNLIGSGNFSSVYKGTLEELKDKVVAIKVLDLQKKGAHKSFIAECNALRNIKHRNLVQILTCCSSIDYKGQEFKALIFQYMTNGSLEQWLHPKTLSTEHPRILSLDQRLNIMVDVASALHYLHHECEQSIIHCDLKPSNVLLDNEMVAHVSDFGIAKLLSTINDTISKQTSTTIGIKGTIGYVPPEYGVSSEVSTCGDIYSFGILMLEMLTGRSPTDEMFEDGQNLRNFVITLFPDNLLQILDPRLIPSDEAPISRGNNWNLDPNVEMCLVSLFRIGLSCTRESPKDRMDIADVTRELNRISETFLGGVETSK* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00962 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 650 - -
Lapu2g00962 1029 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524
Lapu2g00962 1029 SMART LRR_sd22_2 475 496 - -
Lapu2g00962 1029 SMART LRR_sd22_2 276 302 - -
Lapu2g00962 1029 SMART LRR_sd22_2 131 154 - -
Lapu2g00962 1029 SMART LRR_sd22_2 227 253 - -
Lapu2g00962 1029 SMART LRR_sd22_2 427 453 - -
Lapu2g00962 1029 SMART LRR_sd22_2 572 598 - -
Lapu2g00962 1029 SMART LRR_sd22_2 379 405 - -
Lapu2g00962 1029 Pfam Leucine rich repeat 551 608 IPR001611 GO:0005515
Lapu2g00962 1029 Gene3D Phosphorylase Kinase; domain 1 695 796 - -
Lapu2g00962 1029 FunFam Piriformospora indica-insensitive protein 2 172 270 - -
Lapu2g00962 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1026 - -
Lapu2g00962 1029 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Lapu2g00962 1029 Gene3D Ribonuclease Inhibitor 42 154 IPR032675 -
Lapu2g00962 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Lapu2g00962 1029 CDD STKc_IRAK 720 1017 - -
Lapu2g00962 1029 SMART serkin_6 714 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00962 1029 SUPERFAMILY Protein kinase-like (PK-like) 687 1014 IPR011009 -
Lapu2g00962 1029 Gene3D Ribonuclease Inhibitor 157 320 IPR032675 -
Lapu2g00962 1029 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 42 153 - -
Lapu2g00962 1029 SMART LRR_typ_2 131 155 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 203 227 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 524 548 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 476 499 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 276 300 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 451 475 IPR003591 -
Lapu2g00962 1029 SMART LRR_typ_2 572 595 IPR003591 -
Lapu2g00962 1029 Gene3D Transferase(Phosphotransferase) domain 1 797 1022 - -
Lapu2g00962 1029 SUPERFAMILY L domain-like 40 337 - -
Lapu2g00962 1029 PANTHER OS04G0122200 PROTEIN 115 229 - -
Lapu2g00962 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 796 - -
Lapu2g00962 1029 ProSiteProfiles Protein kinase domain profile. 714 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00962 1029 ProSiteProfiles Leucine-rich repeat profile. 477 498 IPR001611 GO:0005515
Lapu2g00962 1029 Pfam Leucine Rich Repeat 278 297 IPR001611 GO:0005515
Lapu2g00962 1029 Pfam Leucine Rich Repeat 477 496 IPR001611 GO:0005515
Lapu2g00962 1029 SUPERFAMILY L domain-like 380 634 - -
Lapu2g00962 1029 Pfam Protein kinase domain 718 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00962 1029 Gene3D Ribonuclease Inhibitor 330 653 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00962 Lapu-Chr2 8919598 8923688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00962 40 1028 Receptor kinase-like Gene Family AT3G47570 44.600 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lapu2g00962 Pkinase 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00962 - - gmx:102664380 1555.81