Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00956 ATGGGGTCCAGTGGCAGCAAAGCCACGTCGTCATCGTCTTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGACACAGAGGTTTCCCGTCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTGACATACACCAGTGGCAATGAATTAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAATCGGATAAATCTGATGAAGTGCCTTCTAACATTGACATTGAGGAGTGGCGTCACACTGCATCTAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCCTCAAGTCGGTTCCTGTCTCGTTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCAGTTTCTTCAACAAGTCTCACAATATTTAATGATGAAGATGAGCTTGGTCTGCATCCAGGGCCTCCTGGCAGATTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGAATCTTTTGTTAGTCAAGTGCCTATACAATGTCATGAAGAAGCTTCTAATAATTTACGACCTAATGGCCCGTCATTGGTTTCACCTGGTAATTTGGTTAGCAGTCGCCCACTTTCTTCTGTCCAGGATGTGGTTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGTCAACATGTTTTCACCAAGAATTCATACTGATACAGAAAATGTTGATACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTTGAACGTAACGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACATTGTCAGACTTCACCTTTTGTCCTATGCAACGGGAACGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACGAGTAGGGGATAGAGACACAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCCACCCAGTACACCTAGCTCCTTGTTTGGCATACAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATTCGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCGTGTATCTTATCTGGTCAACATAGAAACGGTCGTTGTGCATGCAGACCCAATAATCGTGATACCAATTCAAATGATGACACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAAGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAACTATACAAAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1707 0.4388 MGSSGSKATSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNELDSDEGKTESFRKVKSDKSDEVPSNIDIEEWRHTASRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSLTIFNDEDELGLHPGPPGRLINRNETQHRSDLLNESFVSQVPIQCHEEASNNLRPNGPSLVSPGNLVSSRPLSSVQDVVRDGNGAREVPDVNMFSPRIHTDTENVDTRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRRVGDRDTRVSPTGRNASNSSTPRYPPPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRPNNRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYKKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPREN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00956 568 SMART ring_2 513 554 IPR001841 -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 54 68 - -
Lapu2g00956 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 560 IPR013083 -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 315 333 - -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 1 19 - -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 102 121 - -
Lapu2g00956 568 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 69 101 - -
Lapu2g00956 568 FunFam Putative RING zinc finger domain superfamily protein 482 560 - -
Lapu2g00956 568 Pfam Ring finger domain 512 555 IPR001841 -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 315 359 - -
Lapu2g00956 568 MobiDBLite consensus disorder prediction 1 121 - -
Lapu2g00956 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Lapu2g00956 568 SUPERFAMILY RING/U-box 491 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00956 Lapu-Chr2 8865672 8880108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00956 232 562 C3H Transcription Factor Family AT5G45290 62.059 2.67e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00956 - - gmx:100815830 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00956 2 8865672 8880108 Lapu2g00956 2 8865672 8880108 ECH