Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00939 ATGGAGAGCAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTCGAGATTCAAGATGTTCAAGAACAAATAAGGGCGTTGATTGAGAGACAAGAGAATTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCTAATAATGTGGCTTCAAGCGCTGTGGAAGATTGGAGTGGGGCATTTGGATGGGATTCTGAAGCAGATGATGTTAGGTTGAATGTTTTTGGCATTTCGTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGACGTTCTGGTTATCATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACAGCTTTGGGCATTCCTGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGACCTCAAAGTATTGTATGTTACACCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGACTACAAGAGTCTTGGTATTCTTAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAGAATGATCTGACAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCAGTTGGGAAGGTAGTCATTGATGAAATTGCACAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGTTGAGGGAGAGAAGAATATCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCATAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCCGAATGCCTACTGTACTTTAGACCTGGTGATGTTCCCCGCCAGAGTTCAATGGTCTTCTACGAAAATTCGGGGTTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAAACAATGCCGACGAAGTGCCTTTTTTCGACATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGTGACATCTGTGCATTCTCAAGAGAAGTGAAAGAATTGGACGTCTCTGATCATGCAAAATTGATGGTTTCATTGTTGCAAGATATGCAAACAAATGATCAGAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGAGAGGAAATTGAGCAGCTTATCTTACACCTTTTATTGGGGCGATTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCTTACATTGCTGTGGGGCCGTTGGCCAAGCAAATACTACAAGGGAAGAAATCTGTGACACTTGAGATTTACAGTGAACATAGAACTAAAGCTGGTGTAAGATCAGTGAAGCGCTGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCATCTGCCCATGGAGGAATACTCCCACACTCAGTCCTATCCACTGAACAAATCAGCTTATTAAGTTCTCAAAAACCAAACTCACTGGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTACGGAGGTAGAATACTTCGGCAAATTGAAAAATATTCTGATTCCAAGCCGACTGATAAACAAGAAAATGATGGTAGAGTAGCAAAAAGGTCGAAGACCAAGAAAAATCTTGTTCTTATTGAGAGTAGTGAAGATGAAGAATGA 2106 0.4107 MESNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEANNVASSAVEDWSGAFGWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKALEKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLTEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAQFIQESYPNNESGIVYCFSRKECEQVAKELRERRISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKKQCRRSAFFRHFAEPLQECNGMCDICAFSREVKELDVSDHAKLMVSLLQDMQTNDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLGRFLKEEFQHTAYATNAYIAVGPLAKQILQGKKSVTLEIYSEHRTKAGVRSVKRCLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQISLLSSQKPNSLEQLEKVIGKLKTEKYGGRILRQIEKYSDSKPTDKQENDGRVAKRSKTKKNLVLIESSEDEE* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00939 701 Coils Coil 511 531 - -
Lapu2g00939 701 MobiDBLite consensus disorder prediction 665 701 - -
Lapu2g00939 701 FunFam ATP-dependent DNA helicase 598 668 - -
Lapu2g00939 701 Pfam RecQ zinc-binding 418 474 IPR032284 -
Lapu2g00939 701 Gene3D - 279 475 IPR027417 -
Lapu2g00939 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Lapu2g00939 701 Gene3D HRDC domain 598 668 IPR044876 -
Lapu2g00939 701 Coils Coil 3 37 - -
Lapu2g00939 701 MobiDBLite consensus disorder prediction 665 695 - -
Lapu2g00939 701 CDD SF2_C_RecQ 279 415 - -
Lapu2g00939 701 CDD DEXHc_RecQ1 71 278 - -
Lapu2g00939 701 FunFam ATP-dependent DNA helicase 279 475 - -
Lapu2g00939 701 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 660 - -
Lapu2g00939 701 Pfam RQC domain 480 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu2g00939 701 Pfam HRDC domain 603 662 IPR002121 GO:0003676
Lapu2g00939 701 Gene3D - 479 579 IPR036388 -
Lapu2g00939 701 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lapu2g00939 701 SMART helicmild6 325 406 IPR001650 -
Lapu2g00939 701 FunFam ATP-dependent DNA helicase 48 278 - -
Lapu2g00939 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Lapu2g00939 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 422 IPR027417 -
Lapu2g00939 701 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Lapu2g00939 701 Gene3D - 46 278 IPR027417 -
Lapu2g00939 701 ProSiteProfiles HRDC domain profile. 594 673 IPR002121 GO:0003676
Lapu2g00939 701 NCBIfam RecQ family ATP-dependent DNA helicase 82 505 IPR004589 GO:0004386|GO:0006310
Lapu2g00939 701 Pfam Helicase conserved C-terminal domain 303 405 IPR001650 -
Lapu2g00939 701 FunFam ATP-dependent DNA helicase 479 579 - -
Lapu2g00939 701 SMART ultradead3 85 287 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00939 Lapu-Chr2 8717566 8728127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00939 84 420 Eukaryotic Initiation Factors Gene Family AT3G19760 19.429 4.04e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00939 K10899 - gmx:100817635 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00939 2 8717566 8728127 Lapu2g00939 2 8717566 8728127 ECH