Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00933 ATGGTTTGTTGTTTAATTTCGTTTGTTAACTCCATGTCTGATGAATTTGAAATGATAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGATTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGACTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTGGCTGATAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTCGTTGAACAAGACTGTGATGAAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCGGAGACAGAAGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCATCTGCAGCTTTGGAATCCAAAGCTTCTGTCTTTGACGATGAAAATTATGATGAAGAATCTGAAAAGGAGCAAGACTTTCTGAATGAAGATTCTAAAGTTGACAATATCTCCTTATCTGAGGAGCAGGAAGAAAGTGTAGTAGATGCATCTAAAGAAGAGAGTGCTCTTGAACCTGAATTACATGTTGACTCACTACAGACTGAAGAATTGGATGACGATGTACAAAAACTTGAGGAGGAAGGGCCTGAAGTTCAGAAAAGGTCTATGGCTATGCCATTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATATTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACATCGGCAACCTATTCCTAGGGATAGATACAAGTCTTTGGATTTAACTGATGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTCCTCCCAGACTCTCTCACTTTCTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGACATTGATTTGGAGTTTCCAAAATTTGGGTTTCTTCATGCGGAGCCCTCAGTGGTCAGGAAAGATGATCATCAATCAAAGGACTTGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTTGAAAGATCATCCATTCATATGGGCCAACTTCTATCCTCTTGATCAGCAAGATTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTGCAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCTGAGTTGGGAACTTCTGGTGGCAGTGAAATAGAAATTGAAAGCGGGATCCAGAATATTCAGATGGAGCCTCAGAAGATACTGGAAGATAATGATCATAATGTCTTGTTCAGCTCTCCTGTCTCATTGGAGGCCTTTGGCTCAAGGGATTCTTCTGGAGCTAAAACCAATCTAATATCCAGGAGTCTATTTCACCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATATTTCGAGTCTTGCAGATGGAAGAGAGGGGGAGATATCTAAGCATAATCAAAGTGGTCAAGTTATGCGTTTTAACAAGGCTATATCACAAAACAGAGACATGATGGATGGTTCCTGGTTAGACAAGATAATATGGGAGGAGATTGATCAGCCTATGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGCAAGGATGGTGCGCATCTTCGCCTTCATGCTGGGGCTATAATTTTAACTCGATCTTTAAAATCAGTCAGTGGGGACTCTTCTGAACTACCAGGACATGGAAGTCAATATGGATGGCGATATGTTGCTAATGACAAACATTATTCAAATCGGAAAACTTCTCAGCAGTTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTGAAAGTTTTCCACTCTCAACCTGCACTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAGATTATTATAAAGAGTTTGGGAGGCAAGGGGAGTAAACTGCATGTTGATGCTGAAGAAACTCTCTCTACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCGTTGGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAAGGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATGTGTGGCCAAAAGCACAGAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCCCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGACGGACATGTTTTTCTGATGGAATATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCGGATGACCCATCTGGCTCCTTGTTACGCAACACTGATAGTAGCTTGGGGCACATTATTTCTCTTGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTGAAACCTGGTTGCTGTCAGTCATCACTTGAGACAAATATGTATAGAGCACCTGTCTTTCCTCATAAAGTTCCACTAACTGACTACTTGCTGGTTCGTTCATCAAAGGGAAAGTTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGTCAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGGGAATTTCAAGCAGTAGAGAAGCGGCACTTGCCTCCTTATATCCGTGTTGATGAATTTCTCTCACACTTTCCTTACCAATCAGAAGCGTCGTTCCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCCATTTTGGTTAAAAAGAGAAATTTTCGTATGTGGTCGGAGGATGAATTGAGAAAAATGGTTACACCCGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGTCTAAAACATTTAGGAATATCTGAAACACACCCAACAAATATTTCATCTGCAATGAGTCGGCTTCCAGACGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGCGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGTATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGAGGAGGTTCTACTGTTACGGGTACAGATGCTGATCTCCGAAGGTTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCCGAGGAAGTCATTGCGAAACAAACAAGGTGGCATCGCATTGCTATGATACGAAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCAGCTGTAAATGGTGATGAGAATGAGAGTGATTCAGATGGAAATAGTGATCTGGATTCTTTTGCCGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGCGGGTACAAATGACTTAAAACGTGACAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGACGACGCCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGATAAGAAGAAAAAGAAGAAAACTAAAGTCACAGGAGAAGAAACACGATTGCTATCAAAGATGCAATCGAAATTTTCCTTTGACAATGCTGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATAATCCCTTGAAAGAGGATGCGATTACTGATCTTAGGGAGTTTTGGCAGGAGGAAAACTTTGGTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTACACCTATTAGTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGGCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATTTGTGGACCCCTCTAGTCACTCCCAGCCTAAAGCCCCTACCAAAAAGTCAATTTCGAAAAGCATCACAAAAATTGCTTCTGTTGATAATTCGGCAAAAATTCCACTGAAATTCAAATGCGGCTCCACAGAGAAATCTTCTGATAAACCAGCAACAGAGACCCTGCAGAATTCTGACAAGCCAGTCACTTCGGACTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAGGTGAAGCCAGATGATACACAGGCCGAGTCTCGGAAGCATGCTGTTGTTATTCGGCCTCCTACTGAATCCGGTAGAGGGCCTCCTGCTGACCCTGGTAGAGGGCCTCCTGCTGACTCGAGTAGAGGGCCTCCTGCTGACTCGAGTAGAGGTCAGGTTGATTATCTAAAGTTACCAATTAAAATACGACCACCGACAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAACGTACAAAGGAGGTTATTGATGTAGAATTGGACAGTCCTGGTGGAAACACAGGACTTCAACACAGAAAGACTAAAAGAATTGTTGAATTATCGAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGAGGTTTTCCAAAATGGAGCACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAGGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGACGAAATAAAAAGATTTGAAGAAGATATTAGAAGAGAGAGGGAAGAGGAAGAACGCCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAGGAGAAGAGTATTTAGAGGATGCCAGAGCAAGAAGACATGATAAGAGAATGCCAGAAAGAGACCGTAGTGGAAAGAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCATTGTGGACACCATTGTGAAGGATAGGTACGAGCTGTCATATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATCATAGATACGCCTATGGATCTTTCCAGAATCAGAGAGAAGGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGATGTCTGGCAGATTACGTACAATGCACATAAATATAACGACGGGCGAAACCCGGGAATTCCTCCCCTTGCAGACATGCTTTTGGAATATTGTGATTTTTTGCTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAATTAAAGATTTCTAA 5763 0.4144 MVCCLISFVNSMSDEFEMIDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASAALESKASVFDDENYDEESEKEQDFLNEDSKVDNISLSEEQEESVVDASKEESALEPELHVDSLQTEELDDDVQKLEEEGPEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPIPRDRYKSLDLTDDFVEEDEEEFLKGSSQTLSLSKQVSVVHNDVSESNDIDLEFPKFGFLHAEPSVVRKDDHQSKDLCHSAEPMKGDFEEDLSLKDHPFIWANFYPLDQQDWEDEIIWGNSPVASNNNIESCEVSGPELGTSGGSEIEIESGIQNIQMEPQKILEDNDHNVLFSSPVSLEAFGSRDSSGAKTNLISRSLFHPQLLRLESRSEVDISSLADGREGEISKHNQSGQVMRFNKAISQNRDMMDGSWLDKIIWEEIDQPMVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSLKSVSGDSSELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDAEETLSTVKAKASKKLDFKALETVKIFYLGRELEDQKSLAEQKVQPNSLLHLVRTKIHVWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDPSGSLLRNTDSSLGHIISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAVEKRHLPPYIRVDEFLSHFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGISETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSDGNSDLDSFAGDLENLLDAEEFEEGEAGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADKKKKKKTKVTGEETRLLSKMQSKFSFDNAEQVKQITNSLQLDGNNPLKEDAITDLREFWQEENFGAKKSKSLKVNKAKKNDITPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQAGHMRTNKNCPKYGEDLETQLESADMEKSSGKPIFVDPSSHSQPKAPTKKSISKSITKIASVDNSAKIPLKFKCGSTEKSSDKPATETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESGRGPPADPGRGPPADSSRGPPADSSRGQVDYLKLPIKIRPPTEIDREQSHKKIVIKRTKEVIDVELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTGGFPKWSTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLGEEYLEDARARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILESIVDTIVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIREKVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDFLLNENDDSLTSAEAGIEIKDF* 1921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1459 1484 - -
Lapu2g00933 1920 PRINTS Bromodomain signature 1833 1849 IPR001487 GO:0005515
Lapu2g00933 1920 PRINTS Bromodomain signature 1849 1867 IPR001487 GO:0005515
Lapu2g00933 1920 PRINTS Bromodomain signature 1867 1886 IPR001487 GO:0005515
Lapu2g00933 1920 PRINTS Bromodomain signature 1819 1832 IPR001487 GO:0005515
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1249 1278 - -
Lapu2g00933 1920 FunFam Transcription initiation factor TFIID subunit 1 654 744 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 74 95 - -
Lapu2g00933 1920 SMART bromo_6 1795 1906 IPR001487 GO:0005515
Lapu2g00933 1920 SMART ubq_7 672 744 IPR000626 GO:0005515
Lapu2g00933 1920 ProSiteProfiles Ubiquitin domain profile. 672 742 IPR000626 GO:0005515
Lapu2g00933 1920 Gene3D - 654 744 - -
Lapu2g00933 1920 Gene3D - 26 72 IPR036741 -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1503 1529 - -
Lapu2g00933 1920 Pfam Ubiquitin family 674 744 IPR000626 GO:0005515
Lapu2g00933 1920 Coils Coil 1274 1294 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1670 1712 - -
Lapu2g00933 1920 SUPERFAMILY Ubiquitin-like 642 742 IPR029071 -
Lapu2g00933 1920 Gene3D - 1800 1912 IPR036427 GO:0005515
Lapu2g00933 1920 ProSiteProfiles Bromodomain profile. 1816 1886 IPR001487 GO:0005515
Lapu2g00933 1920 SUPERFAMILY TAF(II)230 TBP-binding fragment 28 66 IPR036741 -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1724 1795 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 144 193 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1743 1779 - -
Lapu2g00933 1920 Coils Coil 1691 1744 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1659 1712 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1537 1558 - -
Lapu2g00933 1920 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 20 1916 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 103 118 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1245 1279 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 160 193 - -
Lapu2g00933 1920 CDD Bromodomain 1805 1901 - -
Lapu2g00933 1920 SUPERFAMILY Bromodomain 1786 1906 IPR036427 GO:0005515
Lapu2g00933 1920 ProSitePatterns Bromodomain signature. 1821 1878 IPR018359 -
Lapu2g00933 1920 Pfam Protein of unknown function (DUF3591) 592 1158 IPR022591 -
Lapu2g00933 1920 CDD Ubl_TAFs_like 672 743 - -
Lapu2g00933 1920 Pfam Bromodomain 1807 1882 IPR001487 GO:0005515
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1443 1484 - -
Lapu2g00933 1920 Pfam TATA box-binding protein binding 22 65 IPR009067 -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 103 122 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1564 1578 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1214 1233 - -
Lapu2g00933 1920 MobiDBLite consensus disorder prediction 1498 1614 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00933 672 742 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 4.42e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00933 K03125 - gmx:100780733 3192.52