Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00928 ATGGTTAAGCATAACAATGTCATCCCCAGCGGGCACTTCCGCAAGCATTGGCAAAACTATGTGAAGACATGGTTTAATCAACCAGCACGGAAGACAAGAAGACGGTTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACTGCAGGACCTCTTAGACCTATTGTACACGGTCAAACTCTGAAATACAATATGAAAGTTAGAGCTGGCAGAGGATTTTCTCTCGAGGAGCTGAAGGCGGCTGGTATTCCCAAAAAGCTTGCTCCCACAATCGGAATCGCTGTTGATCACCGCCGCAAGAACCGTTCTTTGGAAAGTTTGCAAGCAAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTAGTCTTCCCAAGACGCGCCCGCAAGGTCAAGGCTGGCGATTCTACACCCGAGGAACTTGCTAATGCAACACAAGTCCAGGGTTCATACTTACCTATTGCGAGGGAGAAGCCATCTGTTGAACTTGTGAAGGTCACAGAGGAAATGAAGGGATTCAAAGCCTATTACAAGCTAAGACTTGAACGCACAAACAAACGCCATTATGGAGCCAGACTGAAGAAGGCTGCTGAGGCAGAAAAGGAAGACAAAAATAACCATATTTAA 633 0.4645 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKPSVELVKVTEEMKGFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKNNHI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00928 210 Coils Coil 196 210 - -
Lapu2g00928 210 PANTHER 60S RIBOSOMAL PROTEIN L13 1 206 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lapu2g00928 210 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lapu2g00928 210 Gene3D - 167 208 - -
Lapu2g00928 210 FunFam 60S ribosomal protein L13 166 207 - -
Lapu2g00928 210 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Lapu2g00928 210 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00928 Lapu-Chr2 8583638 8587077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00928 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 87.435 6.93e-127 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00928 K02873 - gmx:100805957 397.127