Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00923 ATGGAGTCCACAGAGCATGGGATCGTGTCCGTTAGAGAGTTCCATGCGAATGGAAGCCGCATGGTTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAAGCTGAAGATTCGTTACGAGAAGGATTGTCGCTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGTAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGGTTGCAACCTTCCTTGTCTGAAAAAACACCAGTCAAGAAAGGTCGTACTCAAACTGAATCAGTCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAATTGGGGAAATTTACTGACGCTGCTAATAATTGTAAACGTATTCTTGATGCCGTTGAGAAGATATTTTATTTGGGTATTCCCGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTATGATGAAGCAATCTCTGCTTATAGGCGAGCCCTTCTTAGTCAATGGAACCTTGATAATGATTACTGTGCAAGAATTCAGAAGTCATTTGTTATGTTTTTGCTATATAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCATATGTGCCTAAAAATAATATTGAAGAGGCTATTCTGTTATTGATGGTTCTTTTGAGAAAGTTTAGCCTTGGTAAGATGAAATGGGATCCTTCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTGTTTTAGCAAAGCAACTTGAAGAATTGATGCCTGGAGTATACCATCGAATTGATCGTTGGAATTCTTTAGCTTTATGTTATAGTGGAGCTGGACAAAATGACAGTGCTTTGAGTCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACCTTACATCATTATTATTAGCAGCGAGGATCTGCAGCGAGGATCCCCATCTTGCTGCTGAGGGAGTGAACTATGCACAGAGGGCAGTCGACAATGCTCATGGCCAAAATGAGCATTTGAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTCTGAGAGGTCTGACCTTCAGTCAAAAGCTTTGGAGTCATTGGTGGCGGCAATCAAATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCAAAGCACCGAAATTTGTCTGCTGCTTTGCGCTCTGCTAGGCATTTCTTTAATCAAACAGGTGGTTCAGTGTTGAAAGCTTGGAGATTGCTCGCTCTAATTTTGTCTGCACAGCAAAGACTTTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGTCCTCTGCTTAGGCTGAAAGCAAAGTTGAAGATCTCCCAATCACGACCCATGGATGCTATTGAAACCTATCGATACCTTCTTGCATTGGTTCAGGCCCAGAAGAAATCCTTTGGGTCTTTCCAAATTAGTTCAAAGGTTTTGGATGATAAAATAAATGAATTTGATATTTGGCATGGTCTAGCAAATTTATATGGTAGTCTTTCTCATTGGAAAGATGCTGAAATCTGTCTGCAGAAGGCCAGGGAGTTGAAGAAATACTCTGGAGCATTATTGCACACTCAAGGTGTTTTGCTTGAAGGACGTGGACAAAATGAAGAAGCTCTTCTTGCTATTATTAATGGTGTACTAATTGAACCAAACCATGTTCCATGCAAGATCTTGATGGCTGCTATGATTCAAAAATTGGGGCCAAAGTATTTGGCTGCTGCAAGAAGCTCAGTGTCTGATGCACTCCGAATAGAACCCACAAACCGCATGGCTTGGTATTACCTGGGATTGCTTCACAAGCAAGATGGCCGAATAAGTGATGCCGCTGACTGCTTCCAAGCAGCTTCCATTCTTGAAGAATCTGATCCCATTGAAAGTTTCACCTCTATACTTTGA 2082 0.4217 MESTEHGIVSVREFHANGSRMVASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKTPVKKGRTQTESVSVSQHAASLVLEAIYLKAKSLQKLGKFTDAANNCKRILDAVEKIFYLGIPDIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDNDYCARIQKSFVMFLLYSGVEASPPSLAVQIDGSYVPKNNIEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSVLAKQLEELMPGVYHRIDRWNSLALCYSGAGQNDSALSLLRKSLHKHERPNDLTSLLLAARICSEDPHLAAEGVNYAQRAVDNAHGQNEHLKGVALRMLGLCLGKQAKVASSDSERSDLQSKALESLVAAIKLEPNNSDLIFELAVHYAKHRNLSAALRSARHFFNQTGGSVLKAWRLLALILSAQQRLSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFQISSKVLDDKINEFDIWHGLANLYGSLSHWKDAEICLQKARELKKYSGALLHTQGVLLEGRGQNEEALLAIINGVLIEPNHVPCKILMAAMIQKLGPKYLAAARSSVSDALRIEPTNRMAWYYLGLLHKQDGRISDAADCFQAASILEESDPIESFTSIL* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00923 693 PANTHER PROTEIN NPG1 9 689 IPR043376 -
Lapu2g00923 693 ProSiteProfiles TPR repeat profile. 651 684 IPR019734 GO:0005515
Lapu2g00923 693 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Lapu2g00923 693 SUPERFAMILY TPR-like 403 677 IPR011990 GO:0005515
Lapu2g00923 693 Pfam Tetratricopeptide repeat 28 75 - -
Lapu2g00923 693 SMART tpr_5 547 580 IPR019734 GO:0005515
Lapu2g00923 693 SMART tpr_5 651 684 IPR019734 GO:0005515
Lapu2g00923 693 SMART tpr_5 581 614 IPR019734 GO:0005515
Lapu2g00923 693 SMART tpr_5 457 490 IPR019734 GO:0005515
Lapu2g00923 693 SMART tpr_5 117 150 IPR019734 GO:0005515
Lapu2g00923 693 SMART tpr_5 301 334 IPR019734 GO:0005515
Lapu2g00923 693 SUPERFAMILY TPR-like 30 202 IPR011990 GO:0005515
Lapu2g00923 693 Gene3D Tetratricopeptide repeat domain 23 217 IPR011990 GO:0005515
Lapu2g00923 693 Gene3D Tetratricopeptide repeat domain 528 687 IPR011990 GO:0005515
Lapu2g00923 693 Gene3D Tetratricopeptide repeat domain 237 527 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00923 Lapu-Chr2 8539001 8547686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00923 11 693 Calmodulin-binding Proteins AT2G43040 71.179 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00923 K21843 - gmx:100814609 1208.36