Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00919 ATGGCCGGGTCACTGACGCCAGGGGCGATAAAGGAAATATGCGGTGCCAATTGCTCCAGTGGTTTGAAGCCGGTGCTGCAAGTTATAGATTTGAAGTTGGTGCAGTCGCAACAAACCACCAACACCGAGAGGTACCGACTGGTTCTCTCCGACGGTTCCTTTTACCAGCAAGGCATGCTCGCTACGCAGATGAACGACCTGGTTCATTCCGGAAAGTTGCAGAAAGGTTCCGTTGTTAGGCTTGTTCAGTTCATCTGCAACGATGTCCAGAACCGCAAGATTATTGTCATAATTGACCTGGAAGTTGTTGTGGAAAAATGTGAACTGATTGGAGAACCCGTAGCGTTACCAAAAGATGGATCTGCAGAATCTGGCACTGGTCAATCAGGAGTCACCTCTGGAAATTCACAACCTTTGAATAACCGTTCACACTCAGGTGGCATGACTGCCAGACCGAATATGGCTGTACCAACTCCAGATCCTCCAAGAGTGAATCCTCCTTCCAGTGCTGTTTATTCTGGTATTTCCAACTCTGGATCTAGTTATTCTAGTAATGCACCTCCTTCATATCCGAAAGTAGAACCAGTAAGTAATTTGTCTAGATCAGCACCATTCACTGGATCTCATGGTGATCAGAACATGGGTATTCGTTATCCCCAATCTGAGGCTTCAAGGCCCTTGCCAAACTCTTATGCTCGTCCACCTCAGCCTATGTATCGGCAGCCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGCTCCCCCCAGGATAATTCCAATAGCGGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCTTTTGACCTTTTGGATTCTGATGGGGGGCAAATTCGAGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTAATTGAAGCTGGTAAGGTATACCTAGTTTCAAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGATCAAGAGCTAACCCTTGATATGACATCGATTATACAGCCATGCCTTGATGATGATAACTCAATTCCAAAGCAGACTTTTAATTTTCGCCCCATTAGTGAAATCGAGAGTTTGGAAAACAACACCATTGTGGATGTGATTGGTGTGGTGACTTCAATTAGTCCTACATCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCTTATTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTTTGTGGGGAAATTTTTGCAACTTGGAAGGACAAAGGCTGCAAACTATCTGTGATGATGGGGCATTTCCAGTTTTGGCTGCAAAAGCTGTCAGAATTAATGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTGCTGTTTGTAGAGCCTGATATTCCAGAGGCTTACACATTGAAAAGATGGTTTGAAAATGAAGGGAAGAATGTCCCAACTCTCTCTATTTCTAGAGATACATCTAATTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTCTGCAACTATTTCATACATTAAGTATGATAACTTCTGTTACCCCGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAGGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGCGTGCCTGCGAAAGATTTGTATTATCTGAAGTATGAAGAACAAGATGATGTAAGATTTGCAGAAATCATCCGGAAGATTCTCTTCACCGAGTATGTGTTCAAGTTGAAAGTAAAGGAGGAGACATTCAGTGATGAACAACGCGTTAAGTCAACGGTAGTTAAAGCAGAAAAGGTAAACTATGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGAAAAACTCATGACTGGGAAATCAGAGGGTGCTACCACCGTTCCCTACTCTTTATCCGGTAATACTGGACTGGGGAGTGTTGAAACTGGACTAGTAATGCCACCAGCTTATAACCCAATAAAGAGCAGCATTAATAGCAGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTGAGCAGTATGGAAACCAATATGGTAATTTTGCTTCAGCTGGTCCTCCTAGTGCATATACATCATGCAGCAACTGTGGAGGCTCGGGTCATACTTCTATACTTTGCCCAAATATAAGAAATCTTCCTGGACAGTCTTCTGGAGGGGGCTTTTCCAACAGGGCATCATATGGTGGATCAGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCGGTGCAGCAACTTCATCATATGGAAGCACTAATACAATGCAGGGAAGATATGGTATTGCTCAAAAGCAACAGTTTGGAGGATATTGA 2610 0.4307 MAGSLTPGAIKEICGANCSSGLKPVLQVIDLKLVQSQQTTNTERYRLVLSDGSFYQQGMLATQMNDLVHSGKLQKGSVVRLVQFICNDVQNRKIIVIIDLEVVVEKCELIGEPVALPKDGSAESGTGQSGVTSGNSQPLNNRSHSGGMTARPNMAVPTPDPPRVNPPSSAVYSGISNSGSSYSSNAPPSYPKVEPVSNLSRSAPFTGSHGDQNMGIRYPQSEASRPLPNSYARPPQPMYRQPSPMYTNRGPIGKNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKVYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCLDDDNSIPKQTFNFRPISEIESLENNTIVDVIGVVTSISPTSSIMRKNGTETQKRTLLLKDMSGRSVELTLWGNFCNLEGQRLQTICDDGAFPVLAAKAVRINDFNGKSVGTIMTSLLFVEPDIPEAYTLKRWFENEGKNVPTLSISRDTSNFPKNDNRKTVSQIKDEKLGTSEKPDWISVSATISYIKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGVPAKDLYYLKYEEQDDVRFAEIIRKILFTEYVFKLKVKEETFSDEQRVKSTVVKAEKVNYASKSRVSLELIEKLMTGKSEGATTVPYSLSGNTGLGSVETGLVMPPAYNPIKSSINSSRDFGMPANQVGEQYGNQYGNFASAGPPSAYTSCSNCGGSGHTSILCPNIRNLPGQSSGGGFSNRASYGGSGGGASGECFKCHQPGHWARDCPGSGAATSSYGSTNTMQGRYGIAQKQQFGGY* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00919 869 Gene3D - 373 512 IPR012340 -
Lapu2g00919 869 SUPERFAMILY Retrovirus zinc finger-like domains 810 842 IPR036875 GO:0003676|GO:0008270
Lapu2g00919 869 Pfam Zinc knuckle 824 839 IPR001878 GO:0003676|GO:0008270
Lapu2g00919 869 SUPERFAMILY Nucleic acid-binding proteins 260 374 IPR012340 -
Lapu2g00919 869 MobiDBLite consensus disorder prediction 122 148 - -
Lapu2g00919 869 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Lapu2g00919 869 FunFam Replication protein A subunit 4 117 - -
Lapu2g00919 869 SMART c2hcfinal6 824 840 IPR001878 GO:0003676|GO:0008270
Lapu2g00919 869 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Lapu2g00919 869 CDD RPA1_DBD_A 263 365 - -
Lapu2g00919 869 MobiDBLite consensus disorder prediction 169 227 - -
Lapu2g00919 869 Gene3D - 260 370 IPR012340 -
Lapu2g00919 869 FunFam Replication protein A subunit 512 703 - -
Lapu2g00919 869 Gene3D - 513 704 IPR012340 -
Lapu2g00919 869 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lapu2g00919 869 MobiDBLite consensus disorder prediction 115 257 - -
Lapu2g00919 869 SUPERFAMILY Nucleic acid-binding proteins 525 704 IPR012340 -
Lapu2g00919 869 PANTHER REPLICATION FACTOR A 1, RFA1 274 686 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu2g00919 869 ProSiteProfiles Zinc finger CCHC-type profile. 825 839 IPR001878 GO:0003676|GO:0008270
Lapu2g00919 869 Pfam Replication protein A OB domain 384 487 IPR031657 -
Lapu2g00919 869 CDD RPA1_DBD_B 395 502 - -
Lapu2g00919 869 Pfam Replication factor-A C terminal domain 545 694 IPR013955 -
Lapu2g00919 869 Pfam OB-fold nucleic acid binding domain 274 361 IPR004365 GO:0003676
Lapu2g00919 869 Gene3D - 3 116 IPR012340 -
Lapu2g00919 869 SUPERFAMILY Nucleic acid-binding proteins 379 508 IPR012340 -
Lapu2g00919 869 NCBIfam replication factor-a protein 1 (rpa1) 236 701 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu2g00919 869 CDD RPA1_DBD_C 529 702 IPR047192 -
Lapu2g00919 869 Gene3D - 776 847 - -
Lapu2g00919 869 FunFam Replication protein A subunit 373 511 - -
Lapu2g00919 869 FunFam Replication protein A subunit 260 370 - -
Lapu2g00919 869 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00919 Lapu-Chr2 8501342 8505172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00919 1 806 Core DNA Replication Machinery Family AT5G45400 50.345 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00919 K07466 - gmx:100778597 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00919 2 8501342 8505172 Lapu2g00919 2 8501342 8505172 ECH