Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00860 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAGTTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACTCAGACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGCATGAGATTGCATGGTAATGCTGATGTCTTTTCCAAACGCAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGATACAATTCCAGAGTGTCCTGTGTATTCTCCGACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTCTTGATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGTAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACACTAATTCCGGGAGTAACGGAACCCATGCTGTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGGGCATCGAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCCTTTGATGTTCTCCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTGGAGCATGAGGTTCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTATCATAACCTTCCCTAGAGCATATCATGCTGGCTTCAGTCACGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGCACATGCTTGGAACTTGAAGATTCAGATTTTCCCTCTTCAGACATTTTTTCTCATAACAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCACCACTGTGCACGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGTGTCTCTTTCCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACATCGCTTATGTTGACTGCAACTGTCACATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACTTGTGGGAGCAAACACACACTTAATTTGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAAGAAGATGGGATATTACATGAGATAACGAAGCAAACCAAAAGTGACCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTATTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGGATACACTACACAGAATCAATCTGTCTTTGTACACTGCTCTGAAAATCACACACCCTTGGTGTCTGATGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCTCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACTAATATCAATGTAGGAGGTAGTGTTGATTTTGAGGAGTTTGGCGAAAGAATATCCAGCAGTGCATGTGAATCTTCATTATCCCCTGCTGTGTGCCACGAAAGCTCGGTTAAACCACAGGGTGTTCTTCAGAGATTTAATACAAAGCCAATCGCGGACGAGAGTGATTCCGATTCAGAGATATTTAGGGTAAAACGCCCTTCTTCTCTGAAAGCGGAGAGGAGAAATATGAATGATGTCGAGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGACTGAAGAAAGTCCTTCCTGAAGGAAAGAGTGGTCAACAAATGGATTTCAGCAGAACCCATGAATCAAGTTACAAATACAGTCACCCTGTTAACCATAAAGGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCTATAAGATATAAGAAGTTTGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGAGAGGTTGTTGCAGCAACAGACAATTAGGGAACCGCCTTCCATTGAGATGGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGATTGAATTGA 2574 0.4165 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRASASCGMRLHGNADVFSKRKVDKFDTNDLDWTDTIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDIFSHNSIKISFVNLMRFHHCARWFLTKSRACISVSFHSHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLNLREDIMDMEAAAKMFEQEDGILHEITKQTKSDQNMYAYPLSNMFQRAEANGYIPYCELKLDSVIEFYTTPEHSTNNQGYTTQNQSVFVHCSENHTPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINVGGSVDFEEFGERISSSACESSLSPAVCHESSVKPQGVLQRFNTKPIADESDSDSEIFRVKRPSSLKAERRNMNDVESSKQTEQQGLKRLKKVLPEGKSGQQMDFSRTHESSYKYSHPVNHKGRVEVSSRDRFARGNGIPISIRYKKFGNEEISMQRDHHQHRKERLLQQQTIREPPSIEMEPKRLKVRGPSFLGLESRLN* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00860 857 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Lapu2g00860 857 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Lapu2g00860 857 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 781 - -
Lapu2g00860 857 SMART JmjN_1 87 128 IPR003349 -
Lapu2g00860 857 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Lapu2g00860 857 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Lapu2g00860 857 FunFam Lysine-specific demethylase isoform A 83 432 - -
Lapu2g00860 857 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Lapu2g00860 857 Gene3D Cupin 88 439 - -
Lapu2g00860 857 SMART cupin_9 232 405 IPR003347 -
Lapu2g00860 857 Pfam jmjN domain 89 121 IPR003349 -
Lapu2g00860 857 MobiDBLite consensus disorder prediction 749 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00860 Lapu-Chr2 7888425 7895073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00860 85 423 JUMONJI Transcription Factor Family AT1G30810 35.910 1.15e-61 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu2g00860 JmjC 4.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00860 - - gmx:100798611 1520.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00860 2 7888425 7895073 Lapu2g00860 2 7888425 7895073 ECH