Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00847 ATGGATAGCGGTGGGTCCGCTCCGGCGGCGCCAATTCCGAACGCCAACGCGCCGCCGCCGTTTCTGAGCAAGACTTACGACATGGTGGAAGACCCTGCCACCGACGCGATCGTGTCGTGGAGCGCAACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTCGCCAGAGACCTTTTGCCGAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGGAAGGTCGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTCTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGACGAAAACCTGCCCATGGTCAAAATCATCAACAAGCTCAGCAACCCCACGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAACAGCGACAGCAGCAAATGATGTCATTTCTTGCAAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAGCAATAGGCGCATAACGGAAGTCAACAAAAAGCGCAGGCTTAAGCAGGAAGGTATTGCAGAAGCAGATTGTGCTGCTAATCCAGATGGACAAATTGTTAAATATCAACCTCTGGTGAATGAAGCTGCGAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCATCTTTTAATAAAAACCCTGATGACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCTGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTCCGCCCAACTGTTAAACCTGAAATTCCATCTGTACCACAAGCATTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGGTACGCCTTCTATCCCTGTTTCTCAAGCAGATGTGGTGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATTCTTGATATTCCCGAAGAAAATTATATGGCAACTGAGACGGGTGAGGGATATATGGATCCTTCATTGGGCGCAGCTGGGTCATTTCCTATTGATTTTGAAGTCATTTCACCTGATAACATTGATGATTTGTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGATATTGAGACCAATATTGCCGATGTATCCAACGGGAGTGAGGTCCAGCCAACGGAAAATGGATGGAACAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1464 0.4638 MDSGGSAPAAPIPNANAPPPFLSKTYDMVEDPATDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQEGIAEADCAANPDGQIVKYQPLVNEAAKAMLKQIMKWDTSSFNKNPDDYMIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVRPTVKPEIPSVPQALASENVTKDGGHGTPSIPVSQADVVIPDLPPITEMVTGNILDIPEENYMATETGEGYMDPSLGAAGSFPIDFEVISPDNIDDLLGNPSIWDEILQTPVPEDIETNIADVSNGSEVQPTENGWNKTQRMDHLTEQMGLLSSDTKRV* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00847 487 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu2g00847 487 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu2g00847 487 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu2g00847 487 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu2g00847 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 289 IPR027725 -
Lapu2g00847 487 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Lapu2g00847 487 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu2g00847 487 MobiDBLite consensus disorder prediction 314 333 - -
Lapu2g00847 487 FunFam Heat shock transcription factor 1 14 111 - -
Lapu2g00847 487 Gene3D - 14 111 IPR036388 -
Lapu2g00847 487 Coils Coil 139 166 - -
Lapu2g00847 487 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00847 Lapu-Chr2 7732701 7736651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00847 8 484 HSF AT1G32330 54.970 5.77e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu2g00847 HSF_DNA-bind 2.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00847 K09419 - gmx:100815121 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00847 2 7732701 7736651 Lapu2g00847 2 7732701 7736651 ECH