Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00845 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTCCTTCGCTCCAAATCCTTCTTACGCTCACCACAATTTGGGCCCACCAAACCACCGCAACAGGTCCGCACGTAGGAATCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCCGAAGCCGTTTCTTCCTCCAACTCTTACTCCGTTGAGGATGCCAACGAGGACGTCACTGTCGCATCCCTAAATCGCGATGGCGAGGAGGGTGGTGGTGCCTCCGAGCTCAACACGGTTGACGGCACCGACCGCGGGGCTTGTTCCAGCAAGGTCGAGGAAGGAGGTGGCGATGATGATGAAATTCAGACTAGGCTTGATAAGTTGCTCTGTAAAATTGAGGAACCTGAATTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACAGCTAAGTTGAACTCTCTTAATCAACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTATACACTTTTAAAGTCCAATATCTTCCACCGGTTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAATGGTTGGAACCGGTGAAGATTCTGAGTCTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGTCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGACGAGGAAATCACACTTGGGCCTTATGGCATGAATGTTGTTCAGGATGAGCGTGTTGTTTCAGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGAAATCACAATGATCAGAGACACAATGAGAACTTCCTCAAGGAATTACATCAATGTAACATTTGCTTTAGTGAATATGCAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAATGCTTGCAAACCTTTGCCCAGATACACGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGCACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAAAGATTATGAGCGCTGGGAATGCATGATGTTGGAAAAGACACTTGCATCGATGTCTGATGTTGTTTATTGTCCTAGATGTGAAACCCCTTGTATAGAGGATGAAGACCAACATGCTCAATGCCCAAAATGCTATTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAAATTTTGCAGGACCGCCAAAATTCATCTCATTTAAGGGAAGATCAAAAGCGTAGGGAACGTGAAAAAATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTAGAACTGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAGGCACTTGATCCATCAGATCCGTATGGACATTTCAGGGATGGTTCATGTGATCTGTTCCCACGAGAAATGGTTGCGTCCTGGGAAGAGCGAATAAATCATCGCCAGGCGGTAGGACAGTTACAGGCTGAGCTTTTTCCTCAGCGTGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGTTACTTGTGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCAAAGGGCTGCAAACAGCATTCCGAGGGATAG 1929 0.4381 MRGKQQRGAEDSSFAPNPSYAHHNLGPPNHRNRSARRNRGPHQPNLKYRVVNKPEAVSSSNSYSVEDANEDVTVASLNRDGEEGGGASELNTVDGTDRGACSSKVEEGGGDDDEIQTRLDKLLCKIEEPELSEEQIRINDQLQQDEILVVESIYGENVFSLERWKGLRCFQIHIHIDVLGEIAITAKLNSLNQLETVSSSSDEFLYTFKVQYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILSLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNHNDQRHNENFLKELHQCNICFSEYAGSEFIRLPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDKDYERWECMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLREDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKALDPSDPYGHFRDGSCDLFPREMVASWEERINHRQAVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00845 642 FunFam RBR-type E3 ubiquitin transferase 476 585 - -
Lapu2g00845 642 CDD RING-HC_ITT1-like 329 388 - -
Lapu2g00845 642 Pfam RWD domain 141 274 IPR006575 GO:0005515
Lapu2g00845 642 Gene3D Ubiquitin Conjugating Enzyme 132 281 IPR016135 -
Lapu2g00845 642 MobiDBLite consensus disorder prediction 1 113 - -
Lapu2g00845 642 Gene3D - 477 587 - -
Lapu2g00845 642 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 184 549 IPR031127 GO:0004842|GO:0016567
Lapu2g00845 642 Pfam Zinc finger, C3HC4 type (RING finger) 335 380 IPR018957 GO:0046872
Lapu2g00845 642 ProSiteProfiles TRIAD supradomain profile. 331 559 IPR044066 -
Lapu2g00845 642 SUPERFAMILY RING/U-box 586 639 - -
Lapu2g00845 642 ProSitePatterns Zinc finger RING-type signature. 352 361 IPR017907 -
Lapu2g00845 642 SMART ring_2 591 620 IPR001841 -
Lapu2g00845 642 SMART ring_2 335 382 IPR001841 -
Lapu2g00845 642 SMART ring_2 423 511 IPR001841 -
Lapu2g00845 642 SUPERFAMILY RING/U-box 403 465 - -
Lapu2g00845 642 SUPERFAMILY UBC-like 139 274 IPR016135 -
Lapu2g00845 642 MobiDBLite consensus disorder prediction 29 43 - -
Lapu2g00845 642 SUPERFAMILY RING/U-box 330 414 - -
Lapu2g00845 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 418 IPR013083 -
Lapu2g00845 642 MobiDBLite consensus disorder prediction 54 71 - -
Lapu2g00845 642 ProSiteProfiles RWD domain profile. 145 280 IPR006575 GO:0005515
Lapu2g00845 642 SUPERFAMILY RING/U-box 494 550 - -
Lapu2g00845 642 SMART RWD2001b 145 280 IPR006575 GO:0005515
Lapu2g00845 642 CDD Rcat_RBR_RNF14 493 558 IPR047548 GO:0008270
Lapu2g00845 642 Pfam IBR domain, a half RING-finger domain 498 541 IPR002867 GO:0008270
Lapu2g00845 642 Pfam IBR domain, a half RING-finger domain 403 461 IPR002867 GO:0008270
Lapu2g00845 642 FunFam RBR-type E3 ubiquitin transferase 131 282 - -
Lapu2g00845 642 SMART ibrneu5 490 555 IPR002867 GO:0008270
Lapu2g00845 642 SMART ibrneu5 403 461 IPR002867 GO:0008270
Lapu2g00845 642 CDD BRcat_RBR_RNF14 414 465 - -
Lapu2g00845 642 ProSiteProfiles Zinc finger RING-type profile. 335 383 IPR001841 -
Lapu2g00845 642 FunFam RBR-type E3 ubiquitin transferase 330 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00845 334 572 ARIADNE family AT2G31780 23.171 1.50e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00845 K11971 - gmx:100500662 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00845 2 7714144 7723513 Lapu2g00845 2 7714144 7723513 ECH