Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00842 ATGGGTAGGTCACCATGTCGTGAGGAGATTAGTGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAAAAGCTGATTGATTATATCAGCAAACACGGCCATGGCAGTTGGAGAACACTTCCAAAGCGTGCAGGGCTCAATAGATGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAATTATCATCAACCTTCATTCAGTTCTCGGAAACAAGTGGTCGAAGATTGCAGCTCATCTGCCAGGACGAACTGATAATGAGATCAAGAACTATTGGAACACTCACATAAGGAAAAAGCTTCTGAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGAACAGACTTAAATCACCTTGTGAGTCTTTCTCAGTTGCTTGGTGTGTCTAACTTGAGCAGTGTTATGAGTACTACTTGGGGCAATAACCCTCTTGGTTTACAACCGGATATCACTCAGCTAGCCAAAATACAACTGCTGCAAAATCTTTTGCAACTTATGAATAGCAATTCATTTGTTAACATGGGTAACCCTTATCTCTTAGACAATACTCACCTCAACCCTTTATTTCTGAACGGCAAATACCCCCTCCAAACTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAAGATTTGCTAACCCTAGTGTGTACTCTCAAGCACAAAGTGAGTGCTCTCTGCAGCAGGATATTTCAAAATCATTGGCAGATGTGGAGGGTGGATCCATTCCACAAGATCTTGATCACAACAAAATCAGCATCACTAATCATTCACGTGAAAATCAAGTGGAAAACCCTCTTCCTGCATTAGTTGCAGCCTCTCCTAGAATGGGAACCTTCAACCAAATGGACAGTAGCTGTGGTAACTTAGCACAAACGTGCACAGAGTCACCTTCCAACACATTCCTTGATGATTGGGAGAAGTTGCTTGACGATGAAAGAAGCGGTTCCTATTGGAAAGAGATTCTAGAGTAA 1020 0.4275 MGRSPCREEISGVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLVSLSQLLGVSNLSSVMSTTWGNNPLGLQPDITQLAKIQLLQNLLQLMNSNSFVNMGNPYLLDNTHLNPLFLNGKYPLQTKEPVVLSGSERFANPSVYSQAQSECSLQQDISKSLADVEGGSIPQDLDHNKISITNHSRENQVENPLPALVAASPRMGTFNQMDSSCGNLAQTCTESPSNTFLDDWEKLLDDERSGSYWKEILE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00842 339 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lapu2g00842 339 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lapu2g00842 339 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lapu2g00842 339 CDD SANT 71 113 IPR001005 -
Lapu2g00842 339 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu2g00842 339 SMART sant 14 64 IPR001005 -
Lapu2g00842 339 SMART sant 67 115 IPR001005 -
Lapu2g00842 339 FunFam MYB-related transcription factor 14 67 - -
Lapu2g00842 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu2g00842 339 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lapu2g00842 339 Gene3D - 14 67 - -
Lapu2g00842 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lapu2g00842 339 Gene3D - 69 135 - -
Lapu2g00842 339 FunFam Transcription factor MYB39 70 131 - -
Lapu2g00842 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Lapu2g00842 339 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00842 Lapu-Chr2 7675799 7677127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00842 1 339 MYB Transcription Factor Family AT5G16770 47.714 4.21e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00842 Myb_DNA-binding 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00842 K09422 - gmx:778082 558.91