Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00839 ATGGGCAAGAAGAAATCCAAGGACCCACAACAAACCCCTCAAACCGACACCGTTTCATCTCCTTTCAGCATTTTCAACAACCTCTTCGGCAACGCGCCGGAACAGTGCACCGCCGCCGCCTCTCTATTTTCCGATGACAACCCCTTTCGGAGAAAACCTGCCCCACTTTCCGACACAACCAACCGCTCTCACATCCCTAACAATGGCGGCGCGGAGAACCGTGATGCCGGCGACGTGAAGAAGCGGAAGAAGAACAAAGAGAAAAGCCCAACCCTTGATCCAGTTTCTTTAACCGAAGTTTTGGAGAAATCGGAGAAGAAAAGGAAACGCGGTTCTGATGAAGGAACAGAAGGAGGCCTTAATTTGGGTGCTGAAGCAATTGGGAAAAGGAAGAGGAAAAGGGACGAAGTTGAGAGAGAGTGGGAGGAGAAGAGATATGGGACGGTGGAAGAAGGTGAAAAGGAAGGGATTGAGAAAAAAACTGTTGGGAACAAGAGGAAGGCGTTGGATGATCCAGCTGATACGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAACTTTTGAGGACCGTTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAGAAGTTTGGTGAGGTTGAGTCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAGAAACCTAGAAAGGGGGCTATCCTTGCGAAAAAAATAAACGATGCTGCTGATAGTGTACATGCTTACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCGCACAACATGTCACTGGTTGAGGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACGTAAAGGGGACAGCGTTACTCTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACTTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATCGCTTACGTGCTATTTAAAACAAAGGAGGCTGCTAAATTTGTTGTTAAGAAAAGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCCAAAAGGCCAAACCCGTCATCAACACAAGCCCCTACCCCTTCTAAAAGGCCAAACACATCATCAAAGCAAGCTCCTGGTACTCCTGCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCAAACAGTATTAACAGATCAAACAGAAAACCCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCCCAAGAAAACCCAAGGTGGAGAAAAGGCAAAAGAACGCCAGACAAAGAGGCCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAATTGGGCAAGGATAGTGGTGCACCAAAGCAAGCAGGAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTGCGAAATAAGAAAGTAAAAAAGATCAGGTAG 1548 0.4574 MGKKKSKDPQQTPQTDTVSSPFSIFNNLFGNAPEQCTAAASLFSDDNPFRRKPAPLSDTTNRSHIPNNGGAENRDAGDVKKRKKNKEKSPTLDPVSLTEVLEKSEKKRKRGSDEGTEGGLNLGAEAIGKRKRKRDEVEREWEEKRYGTVEEGEKEGIEKKTVGNKRKALDDPADTMVSKEGFDDEDKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKRKGDSVTLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSHAKADATPSKRPNPSSTQAPTPSKRPNTSSKQAPGTPAKKFSVASRSPSNSINRSNRKPNASYQGLRATKSDVPKKTQGGEKAKERQTKRPSVAARKAKAKLGKDSGAPKQAGGVKRKLDSRTPDSTLRNKKVKKIR* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00839 515 SMART rrm1_1 191 280 IPR000504 GO:0003723
Lapu2g00839 515 SMART rrm1_1 302 378 IPR000504 GO:0003723
Lapu2g00839 515 Gene3D - 295 389 IPR012677 -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 387 445 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 1 29 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 74 90 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 126 143 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 54 68 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 99 115 - -
Lapu2g00839 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 375 IPR000504 GO:0003723
Lapu2g00839 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 234 IPR000504 GO:0003723
Lapu2g00839 515 MobiDBLite consensus disorder prediction 373 515 - -
Lapu2g00839 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 281 447 - -
Lapu2g00839 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 284 IPR000504 GO:0003723
Lapu2g00839 515 CDD RRM1_RBM34 190 280 - -
Lapu2g00839 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 382 IPR000504 GO:0003723
Lapu2g00839 515 SUPERFAMILY RNA-binding domain, RBD 183 291 IPR035979 GO:0003676
Lapu2g00839 515 SUPERFAMILY RNA-binding domain, RBD 298 396 IPR035979 GO:0003676
Lapu2g00839 515 CDD RRM2_RBM34 302 378 IPR034221 -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 42 143 - -
Lapu2g00839 515 Gene3D - 186 290 IPR012677 -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 11 29 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 493 509 - -
Lapu2g00839 515 MobiDBLite consensus disorder prediction 452 482 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00839 192 381 Eukaryotic Initiation Factors Gene Family AT1G22760 26.263 9.15e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00839 K14837 - gmx:100784494 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00839 2 7644214 7649946 Lapu2g00839 2 7644214 7649946 ECH