Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00835 ATGGCTTCTCTAGGCAACCCGAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCCCCTCTAGTAATTGCTGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACACAGCGAAGACCACGAAGAAAACGTTGAATTGGAGGAGGATCACAACCCTTCGCTCCATGAGCCTTGGCATGCTCCAGCCATTGGGTTAGATGAGGCTCTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGTGATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGATAACGAAAGTGTTAGACTCTTGCCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGTCGTGCTAGCGTATTCACCTTCAGTGCTGCAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGCAGTGAAACTTCAGAAAACCAACATGCAGATGAAAATGTTGCTGTTACTACAAGGGACAGTGATTTGGATGCTGTAGAAGAAGTCACACACGGTGGAGCAGTTCCAAAGACTGCATTGCGTGCTTTGAGTGATCTAGGAAATTTGAGGGGAAGGCATAGTGTAATCGAGATTAGAGATGAAGAGTATGATTCCATTAGAAGGACAGTTTCTATGGATCATTCATTTCAAAGGGGTAGTGGTCTTTCAGTGGCTGATGTTCTCCATGTGAATCAAGAGCATGAAGGATGTTCTAATGGGGCTGGTCCCTCAAAGGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGCGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGATTCTCCTTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTGCCTGTCTGA 1077 0.4457 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSHSEDHEENVELEEDHNPSLHEPWHAPAIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFEDNESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASVFTFSAAALHVATPVIELGSETSENQHADENVAVTTRDSDLDAVEEVTHGGAVPKTALRALSDLGNLRGRHSVIEIRDEEYDSIRRTVSMDHSFQRGSGLSVADVLHVNQEHEGCSNGAGPSKGSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSFSRNGRGRQWVLPV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00835 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Lapu2g00835 358 PANTHER RING-H2 FINGER PROTEIN ATL16 41 324 IPR044600 GO:0016567|GO:0016740
Lapu2g00835 358 Pfam Ring finger domain 141 184 IPR001841 -
Lapu2g00835 358 SMART ring_2 142 183 IPR001841 -
Lapu2g00835 358 CDD RING-H2_EL5-like 141 184 - -
Lapu2g00835 358 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Lapu2g00835 358 FunFam RING-H2 finger protein ATL54 117 190 - -
Lapu2g00835 358 SUPERFAMILY RING/U-box 122 190 - -
Lapu2g00835 358 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00835 Lapu-Chr2 7605786 7608570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00835 1 318 C3H Transcription Factor Family AT3G03550 42.433 1.12e-72 228