Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00834 ATGGCTACTTTAGAATCAGCCCTCACCCTGTTCGCACCGCAACGATTTTCCGATAACTATCGTTCGTCTGCAAAACCACCGCACTCCATTAAGCTCCATGCTTCCGCTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAAACCCCAAGACTCTGCGTCCAGCTATGCTCCGCGCTGCAAGAGGTACCCACAACAGAGAAAGCACCTGATCCAACCCCACCAACTGACAACGTCACCAAGCTCTACGTCGCTAACTTGTCCTGGTCTATGTCGCTGGACGACATCAAGGACGTCTTTGCCCAATGTGGAACCGTAACCGACGTCGAGATAATAAAGAACAAAAGAGGGAGGCACATGGGATATGCCTTCGTCACTATGGATTCCGGGGAAGAGGCTCAGGCAGCTGTTGATAAATTTGACTCATATGAATTAGCAGGTCGGATAATAAGGGTGGAGCTTGCGAAGACATTCAAGAAACCTCTTCCTTCTCCTCCGCCACCTCCTCCAGGTCGCCATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGGCAAGTCTTCACTGAAAATTTCAAAACACCAGTTTCAGCTAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTCCTTACTAGGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGAACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAATGAGGCTGAAAATGAAAAAGAGGAAGACCAGATTAAAGATGCTGGAAGTGAAGATGAAGACCAAGGTTCTGATGCTCAACCAGAAGAGTCATAA 873 0.4742 MATLESALTLFAPQRFSDNYRSSAKPPHSIKLHASASLFFSSKASFKTPRLCVQLCSALQEVPTTEKAPDPTPPTDNVTKLYVANLSWSMSLDDIKDVFAQCGTVTDVEIIKNKRGRHMGYAFVTMDSGEEAQAAVDKFDSYELAGRIIRVELAKTFKKPLPSPPPPPPGRHPRETRHVLYVSNLAWKARSTHLRQVFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTREDAEAAISTVDGKELMERPLRLKFSEKKDNEAENEKEEDQIKDAGSEDEDQGSDAQPEES* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00834 290 SUPERFAMILY RNA-binding domain, RBD 162 260 IPR035979 GO:0003676
Lapu2g00834 290 CDD RRM_SF 81 152 - -
Lapu2g00834 290 MobiDBLite consensus disorder prediction 251 290 - -
Lapu2g00834 290 PANTHER OS02G0815200 PROTEIN 24 258 - -
Lapu2g00834 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Lapu2g00834 290 Gene3D - 54 160 IPR012677 -
Lapu2g00834 290 MobiDBLite consensus disorder prediction 251 279 - -
Lapu2g00834 290 Coils Coil 252 277 - -
Lapu2g00834 290 SUPERFAMILY RNA-binding domain, RBD 65 169 IPR035979 GO:0003676
Lapu2g00834 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 257 IPR000504 GO:0003723
Lapu2g00834 290 Gene3D - 161 271 IPR012677 -
Lapu2g00834 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 251 IPR000504 GO:0003723
Lapu2g00834 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Lapu2g00834 290 SMART rrm1_1 179 253 IPR000504 GO:0003723
Lapu2g00834 290 SMART rrm1_1 80 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00834 Lapu-Chr2 7597967 7602105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00834 70 284 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 6.26e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00834 - - vum:124843240 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00834 2 7597967 7602105 Lapu2g00834 2 7597967 7602105 ECH