Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00823 ATGGCTTCAGATGCTTTCAATGACAAGAACATTGTGTTTCGGAAGCTCAAGGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCAAAAAATCCAACTTGGGCCTCTGTCACCTATGGGATCTTCCTCTGCATCGATTGTTCCGCTGCACATCGTAGTCTCGGTGTTCATATCAGTTTTGTCAGATCTACAAATTTAGACTTGTGGAGTCCAGAGCAATTGAAAACTATGAGCTTCGGAGGAAACAATCGTGCACGATTTTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCAGAGTTATATAGGCAAATTCTTTCTAAGGAAGTAGCTAAAAGTATGACTAATAAGGAGGTTGATTCACCACCATCACCTACTGCTTCTCAGTTTGAACCAGTTGTTGAAGGACTTCCTCAAGTGAAGACTGATGAATCACCAAAAGAAAATGATTTGCAAAATCCTGGAATTCCAGAGAGCACTTCTTCACCTAAAGCTTCACACACAACAGTTTCTACTACTGTCAAAAAACCTATTTGTGCTAGAAAACCTAGAAAAGCTGCAGGACTTGGTGCTAGAAAGCTTACTAAAAAGTCAAGTGAGTCTCTGTACGAGCAAAAACCAGAAGAACCACCAACTCTAGTTACTTCTGCATCAAACAACGATTTACTTTCAGGGGCATCATCGACATCTCGATTTGAGTATATAGAAAATGATCACTCATCTGATTTGAGTTCTAAAGGTAAGGGTCACTTAGTTAGGCATGCGTCCTTACCAGACTCATCAAGCTTCTTTGCAGACTACGGAATGGATAGTGGTTTTCCAAACAAAAATTCCTCAAAGGAGAAATATTTTGAGTCTGATGAAGCTAGAAGGAAGTTCTCAAATGCTAAATCAATTTCTTCATCTCAATTCTTTGGAGATCAAAACAAAAATGTAAATGATTCACAAGTTACTCTGTCAAAATTTTCGGGTTCAACTTCCATTTCAAGTGCCGATCTTTTTGGTAACTCAGTAAATAACTCTCCCATTGATCTTGATGCTAATGACCTCTTGAATCGACTATCTTTCCGTGCTCATGAAGACATTTCTTCTCTGAAAAATATTGCAGGAGAGACTGGAAAGAAACTCAGTTTCTTGGCCTCCAATTTGATAACAGATATTCAGGATAGAATGACCTAA 1212 0.387 MASDAFNDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDLWSPEQLKTMSFGGNNRARFFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMTNKEVDSPPSPTASQFEPVVEGLPQVKTDESPKENDLQNPGIPESTSSPKASHTTVSTTVKKPICARKPRKAAGLGARKLTKKSSESLYEQKPEEPPTLVTSASNNDLLSGASSTSRFEYIENDHSSDLSSKGKGHLVRHASLPDSSSFFADYGMDSGFPNKNSSKEKYFESDEARRKFSNAKSISSSQFFGDQNKNVNDSQVTLSKFSGSTSISSADLFGNSVNNSPIDLDANDLLNRLSFRAHEDISSLKNIAGETGKKLSFLASNLITDIQDRMT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00823 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Lapu2g00823 403 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Lapu2g00823 403 MobiDBLite consensus disorder prediction 125 144 - -
Lapu2g00823 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Lapu2g00823 403 Coils Coil 401 403 - -
Lapu2g00823 403 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Lapu2g00823 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lapu2g00823 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lapu2g00823 403 MobiDBLite consensus disorder prediction 151 233 - -
Lapu2g00823 403 MobiDBLite consensus disorder prediction 163 186 - -
Lapu2g00823 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 138 - -
Lapu2g00823 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lapu2g00823 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lapu2g00823 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lapu2g00823 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00823 Lapu-Chr2 7488424 7493417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00823 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 1.48e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00823 K12493 K11855 gmx:100785169 575.089