Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00822 ATGAATCTCTGGACGGACGATAATTCCTCTGTTATGGAGGCTTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCCACGCCGGCGCCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACTCTCCAGCATCGCCTCCAGGCCCTCATCGAGGGGGCCAGGGAGAGCTGGACCTACGCCATCTTTTGGCAGTCCTCCTACGACTATTCCGGCTCCACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCCAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTTCGAGAGCTCAACTCCCTCATCTCGGGCTCCTCCGCCGCCTCCTCCGACGACGTAGACGAGGAGGTCACTGACACCGAGTGGTTCTTCCTCGTCTCTATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAACTCCAACCCCGTCTGGGTCACCGGCGGCGACCGCCTCTCCGCCTCCCCCTGCGAGAGAGCTCGCCAGGGACAAGTTTTCGGCCTCCAAACCCTAGTCTGCATACCCTCAGCAAACGGCGTCGTTGAGCTGGGGTCCACCGAGTTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTTCTCTTCAACTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTGGCAGCTACCCCTTCTGTTTCCGTTTCGGTTCCCCCTCAAAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAATTCTATTCAAACCCCCGGTTCCAGTACCTTAACTGAAACTCCAAGCTCTATGCACGCTGTGCCGCAGAGCCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGACCCCAAGAGTGGCAACACTCACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTAAGCTTCAGCGACACCAAGAGAACCTCTTACGGCGGCGTCAATGGTAATTCTAATTCCAATTCAAATTTCTTTTCTGGTCAATCACCGTTTGCTGCTGTTGCGGATGAGAACAACAATAACGACAACGGAAAGAGACGGTCGCCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCACGCGCGATTCTTCCTGCCACTAATTTGAAGTCTGGCGGCGGCGGCGATTCCGATCACTCGGATCTGGAAGCGTCGGTGGTTAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTGAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAACTGAATCAGAGGTTCTACGCGCTCCGTGCTGTAGTTCCCAACGTGTCCAAGATGGATAAAGCGTCGCTTCTGGGCGACGCCATATCTTACATCACGGAGCTGAAGTCCAAGCTTCAAACCCTGGAATCAGATAAAGATGGGTTGCAGAAACAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCTAGCGACAATGTTTCATCTAATCATACTAATCACGCGGGTAATAGTAACATTAAGTCGTCGAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGATGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTGCACCATGCCAGCGTGTCGGTGGTTAACGATTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTGCGGCTCTGTCGGCTAAGGTTGGGGATGTACGATGA 1947 0.548 MNLWTDDNSSVMEAFMSSSDLSSIWPTPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSAASSDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPQNSTHGISKTMQLENSIQTPGSSTLTETPSSMHAVPQSQSVFSRELNFSEYGFDPKSGNTHNQHSLKPESCEILSFSDTKRTSYGGVNGNSNSNSNFFSGQSPFAAVADENNNNDNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSSDNVSSNHTNHAGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSAKVGDVR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00822 648 Pfam Helix-loop-helix DNA-binding domain 468 513 IPR011598 GO:0046983
Lapu2g00822 648 Coils Coil 510 544 - -
Lapu2g00822 648 MobiDBLite consensus disorder prediction 544 558 - -
Lapu2g00822 648 SMART finulus 470 519 IPR011598 GO:0046983
Lapu2g00822 648 MobiDBLite consensus disorder prediction 535 558 - -
Lapu2g00822 648 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 533 IPR036638 GO:0046983
Lapu2g00822 648 MobiDBLite consensus disorder prediction 383 420 - -
Lapu2g00822 648 Gene3D - 456 545 IPR036638 GO:0046983
Lapu2g00822 648 FunFam Transcription factor bHLH13 457 531 - -
Lapu2g00822 648 MobiDBLite consensus disorder prediction 435 474 - -
Lapu2g00822 648 MobiDBLite consensus disorder prediction 383 474 - -
Lapu2g00822 648 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Lapu2g00822 648 PANTHER MYC 12 643 IPR045084 GO:0003700|GO:0006355
Lapu2g00822 648 CDD bHLH_AtAIB_like 461 537 - -
Lapu2g00822 648 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00822 Lapu-Chr2 7472506 7476024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00822 1 645 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.948 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g00822 bHLH-MYC_N 5.9e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00822 K13422 - gmx:100776289 1008.05