Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00810 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGACGGGCTGAGCAAGGTGTCGTCGACCGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGCTTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGCGCTTCTACTTTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACCGAGTTGAGGCTGGGTCTTCCCGGGTCGCAGTCACCTGAAAGGGATCAGGATCTTTTCTCTTTGAGCTCAGCGAAGCTTGACGAGAAGCCACTGTTCCCTTTGGTTCCTACTAAAGATGGGATTTGTTTGTCTTCGCAGAAAACTGTTGTTTCCGGTAACAAGAGAGGTTTTGCTGATACCATGGATGCGTTTTCTCAGGGGAAGTTTACTGGTAATACGGGGATGAACGCAATGCTATCACCGAGGCCTTCTGGAGCTCAGCCTTCTGCCATGAAAGAAATGCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACTGGTCATAACCATACAGGTGCTTCTGTAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCTACCACGTCCAACAAGAACAATGATGAAGTAGACGGAAAACCTGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAGGAGCTGTCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCATGGTTCAGAATACGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCGTGGGAAATGTTCACTGACACCTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAG 1074 0.4795 MSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTLPGLGDEKKENMNLKATELRLGLPGSQSPERDQDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDAFSQGKFTGNTGMNAMLSPRPSGAQPSAMKEMPSKLQERPCSANNGTGHNHTGASVSGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00810 357 MobiDBLite consensus disorder prediction 147 201 - -
Lapu2g00810 357 Gene3D - 233 351 - -
Lapu2g00810 357 FunFam Auxin-responsive protein 232 349 - -
Lapu2g00810 357 SUPERFAMILY CAD & PB1 domains 236 338 - -
Lapu2g00810 357 MobiDBLite consensus disorder prediction 175 199 - -
Lapu2g00810 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Lapu2g00810 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Lapu2g00810 357 MobiDBLite consensus disorder prediction 1 25 - -
Lapu2g00810 357 Pfam AUX/IAA family 75 348 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00810 Lapu-Chr2 7327016 7332252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00810 241 347 B3 DNA Binding Superfamily AT4G23980 29.907 7.36e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu2g00810 AUX_IAA 2.1e-91 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00810 2 7327016 7332252 Lapu2g00810 2 7327016 7332252 ECH