Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00807 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTAGTTTCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTAGGTTGAATGAGTTACTCCCCAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCCTCTTTGAATCCCTCATTTGCTGCATTTTCAACACCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAGCCTACCCTTTTGTTGATGGGTTCACATTGCCAGAGCTTGATTCATCATACACCAGAAATGATGAGTCAGCACCACTTCTGCCACCAGAAGATAACCCATCATTGGAGGATGAGGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAACAAGCAAAAAATGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAATCTTCAACATGGGTTTGTGTGGAGAGAAAAAGCCCAAATCCAAAAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAACGGAGGAGGGAACAAGTCAGATAAACCTCTTGGGCATTTGTAAGGAGCTAAAACCAAATGAAGCAATGTTTGATGTTGAGAGAAGAGAGAAGGACACAAGGATTAGCATATGTTGTGCCACAAAGCCGGGATTACTCCTGTCCACGGTGAACACCCTAGAAGCATTAGGCCTCGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCCTGCTCTGAGGCAGTTGAGCAAAGAAATTGCATGAGCCCAGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGCTATGGTGGGAGATGTCTATAG 978 0.4376 MELSQLGFLDELVSPRKDTWSALSTRLNELLPSGWSFDSFDENQGLASLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPPEDNPSLEDEEFGFLGSDNQSLEQAKNGCKIEEQVTEIPIFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEETEEGTSQINLLGICKELKPNEAMFDVERREKDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEAVEQRNCMSPEEIKQALFRNAGYGGRCL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00807 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 69 319 - -
Lapu2g00807 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 220 IPR036638 GO:0046983
Lapu2g00807 325 Gene3D - 166 237 IPR036638 GO:0046983
Lapu2g00807 325 CDD ACT_UUR-ACR-like 251 292 - -
Lapu2g00807 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Lapu2g00807 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Lapu2g00807 325 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00807 Lapu-Chr2 7287982 7290183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00807 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.539 4.00e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g00807 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00807 - - gmx:100806571 594.734