Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00799 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTGATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGGTTTGATCATTATCATCGTCTCACTTAA 210 0.4571 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTRFDHYHRLT* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00799 69 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Lapu2g00799 69 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Lapu2g00799 69 CDD MADS_MEF2_like 2 63 IPR033896 GO:0000977|GO:0045944
Lapu2g00799 69 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu2g00799 69 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
Lapu2g00799 69 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00799 Lapu-Chr2 7172740 7173150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00799 1 60 MADS-box Gene Family AT4G37940 88.333 4.54e-34 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu2g00799 SRF-TF 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00799 K09264 - pvu:PHAVU_002G143900g 130.954