Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00794 ATGGTGGAGGTTTCATTTCTAAAAACATGGAAAGCATCCATGAAACGCTCAAGCGTCCCCATATTCATAGACAAAAGGTATATATTGCGAAGAGGTGATTCTGGTTTTTATACATACGCAATATTTACTCGTCCGGCAGGATTACCTGCAGTGATGGTTGATCAAATTAGGATTGTTTACAAACTCAATGAAGACAGGTTCCACTATATGGCCATATCTGATACTAGGCAAAGGAATATGCCAACTGCAGAAGATAGAAAAACGGGCCAAGTCCTGGCGTATCCTGAAGCTGTTCTCTTAAACCATGCAACTGACCCAGAATTCCGAGGAGAGGTTGATGACAAATACCAATACTCAATTGAGAACAAAGATAACTCTGTTCATGGGTGGATCACAAAGGATAATTCAACACACGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGCTGGGCCCATTAAGCAAGAGCTCACTTCTCATGTTGGCCCATTTGCTCTTTCCATGTTTACTAGCACTCATTATGCTGGCAAGAAGGTAATCATTACATTTGAAGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAATTTTTGTTTACCTCAACTCTTGTCCAATCAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAGAAAAGTTATCCAATGAAGAAAAAAAATGGCCTTACGATTTCATTGGATCAAAAGATTTCCTTCCATCCGATCAACGGGGAACAGTGTCAGGACAACTTCAAGTTCAAGATGGGGCAGGGACAGCTCAATCAGCTAAAAATTCTTACATTGGTTTAGCTCTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACACAGATGGAAGCTTCTCAATTAAAAATATTGTACCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTCATAGGAAATTATAAATATAAAACTAATATTACCATCAAACCAGGAGACAACATCAAGTTGGGGTCACTTGTATACCATCCTCCAAGAAATGGTCCTACTCTGTGGGAAATTGGGATCCCAGATAGGTCAGCTGCGGAGTTCTATGTACCAGACCCTTACCCAAATCTCGTGAACAAGTTATACCTAAACGATAGCAAAAATGGGTTTAGGCAATACGGCTTATGGGGACGTTACGCTGATTTATATCCAAAAAATGATCTCATTTTCACAGTCGGTGTTTCTGACTATCATAAGGATTGGTTTTATGCTCAAGTTACCAGGTGCACAGAAAAAACCAAATGTGTGCCAACCACATGGCAGATTCAATTCCAGCTTGAAGATATCATAAAGGGAGCAAACTACACACTACAATTGGCCCTGGCATCCGCCACAAATTCTAAATTGGAGGTTAGGTTCAACAACCCGAAGGCAAACCCTCCCCACTTCTCAGAAGAGATAATTGGCGATGACAATGCCATAGCAAGGCACGGCATTCATGGATTGTATGAGTTGCATAGTGTAGTTGTAGATAGCAATCAATTGGTAAAAGGAAAGAACACCATCTATTTGACACAGTCATTTGTCAAAGGTCTATTTGAAGGTGTTATGTATGATTATATCCGATTAGAAAGTCCTCCAACGACTTATAAACAAACTTAA 1656 0.4046 MVEVSFLKTWKASMKRSSVPIFIDKRYILRRGDSGFYTYAIFTRPAGLPAVMVDQIRIVYKLNEDRFHYMAISDTRQRNMPTAEDRKTGQVLAYPEAVLLNHATDPEFRGEVDDKYQYSIENKDNSVHGWITKDNSTHVGFWVITPSNEFRNAGPIKQELTSHVGPFALSMFTSTHYAGKKVIITFEEGETYKKVFGPIFVYLNSCPIKTQFKSLWSDAVEKLSNEEKKWPYDFIGSKDFLPSDQRGTVSGQLQVQDGAGTAQSAKNSYIGLALPGDAGSWQIESKGYQFWTQTDTDGSFSIKNIVPGDYNLYAWVPGFIGNYKYKTNITIKPGDNIKLGSLVYHPPRNGPTLWEIGIPDRSAAEFYVPDPYPNLVNKLYLNDSKNGFRQYGLWGRYADLYPKNDLIFTVGVSDYHKDWFYAQVTRCTEKTKCVPTTWQIQFQLEDIIKGANYTLQLALASATNSKLEVRFNNPKANPPHFSEEIIGDDNAIARHGIHGLYELHSVVVDSNQLVKGKNTIYLTQSFVKGLFEGVMYDYIRLESPPTTYKQT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00794 551 Pfam Polysaccharide lyase family 4, domain II 266 338 IPR029413 -
Lapu2g00794 551 CDD RGL4_M 245 342 IPR029413 -
Lapu2g00794 551 Gene3D - 241 339 - -
Lapu2g00794 551 Pfam Rhamnogalacturonate lyase family 2 112 IPR010325 -
Lapu2g00794 551 Gene3D - 6 196 IPR014718 GO:0030246
Lapu2g00794 551 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 545 - -
Lapu2g00794 551 Gene3D - 350 542 - -
Lapu2g00794 551 FunFam Rhamnogalacturonate lyase B 242 339 - -
Lapu2g00794 551 SUPERFAMILY Starch-binding domain-like 241 340 IPR013784 GO:0030246
Lapu2g00794 551 SUPERFAMILY Galactose-binding domain-like 349 542 IPR008979 -
Lapu2g00794 551 Pfam Polysaccharide lyase family 4, domain III 352 541 IPR029411 -
Lapu2g00794 551 CDD RGL4_C 354 542 - -
Lapu2g00794 551 CDD RGL4_N 23 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00794 Lapu-Chr2 7110282 7113424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00794 2 544 Polysaccharide Lyase AT1G09880 56.466 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00794 K18195 - gmx:100781089 857.055