Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00782 ATGACTCTCAAAGCCTTGGTCTCACTTGTCACCAATTTAATTGGCCTAGCTGAGGGTCAAAGGAACAATGATGCCCCTTTACCTTCTTACATGATTGTCCCACAAAGTAACAAGCAGCAACCATCTGAATCTGCAGCAGCATCCAATTTCAATGAGGATTTCTGGTGTTGTGTGTGCTTGTCAAGTTTAAAGGCCAGAGATGAAATCCGTGTCCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACATGTCCACTCTGCCGTTTCTCAATGGGAGCCGAGGAGAAGTCTAATTGTGCTGAAATGTTCACTGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAA 390 0.4205 MTLKALVSLVTNLIGLAEGQRNNDAPLPSYMIVPQSNKQQPSESAAASNFNEDFWCCVCLSSLKARDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSMGAEEKSNCAEMFTEEMLIWFSSFHIAGM* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00782 129 CDD RING-H2_PA-TM-RING 56 98 - -
Lapu2g00782 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 103 IPR013083 -
Lapu2g00782 129 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Lapu2g00782 129 SMART ring_2 56 97 IPR001841 -
Lapu2g00782 129 Pfam Ring finger domain 56 98 IPR001841 -
Lapu2g00782 129 PANTHER TARGET OF ERK KINASE MPK-1 39 106 - -
Lapu2g00782 129 SUPERFAMILY RING/U-box 40 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00782 Lapu-Chr2 6993524 6993914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00782 41 101 C3H Transcription Factor Family AT1G04790 45.902 4.68e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00782 - - gmx:100809233 228.024