Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00743 ATGTCTGCCGTCGCCGGAGAAGCTACCGCTCCCACTGTGGAAAAGCCAGTGGAGGAGGTAAAGGCGCCTAAGGAGAAAAAACCTAAGGCTACGAAAGAGAAGAAGCCAAAGCAGGCTAAGACTGCTTCACATCCTCCATATTTTCAGATGATCAAGGAGGCTTTGGTGGCGCTGAATGAGAAAGGAGGATCGAGTCCTTATGCCATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGTCTGCAATTGAAGAACCAAGCCGCGAGAGGGAAACTCATGAAAATCAAGGCCTCTTACAAACTTTCTGAAACCGCGAAGAAGGAGAAGAAGCAGACGAAGGCCAGCGCTGAGAAGAAAGAATCGCGTCCTAAACGAAGCAGAAGCGCAACTACCGCTGCTCGAAAGAGCAAGAAAACAGAGGCGGTTAAAAAGGCAGGGAAGAAGGTTGGGCCGAAGAAGAGTAAGAAGGTGTCGACCCCCGCGAAGCCAAAACAGCCCAGGTCCATTAGGTCTCCGGCCAAGAGGAGCCGGAAGACTTGA 570 0.5123 MSAVAGEATAPTVEKPVEEVKAPKEKKPKATKEKKPKQAKTASHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLMKIKASYKLSETAKKEKKQTKASAEKKESRPKRSRSATTAARKSKKTEAVKKAGKKVGPKKSKKVSTPAKPKQPRSIRSPAKRSRKT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00743 189 MobiDBLite consensus disorder prediction 112 157 - -
Lapu2g00743 189 CDD H15 41 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu2g00743 189 Coils Coil 112 132 - -
Lapu2g00743 189 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu2g00743 189 PRINTS Histone H5 signature 128 142 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu2g00743 189 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu2g00743 189 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu2g00743 189 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu2g00743 189 MobiDBLite consensus disorder prediction 1 46 - -
Lapu2g00743 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu2g00743 189 MobiDBLite consensus disorder prediction 112 189 - -
Lapu2g00743 189 SUPERFAMILY "Winged helix" DNA-binding domain 40 123 IPR036390 -
Lapu2g00743 189 FunFam Histone H1 39 131 - -
Lapu2g00743 189 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu2g00743 189 Gene3D - 38 129 IPR036388 -
Lapu2g00743 189 PANTHER HISTONE H1 20 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00743 Lapu-Chr2 6583474 6584143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00743 40 111 Single Myb Histone (SMH) Gene Family AT1G72740 38.889 2.81e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00743 K11275 - gmx:100500169 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00743 2 6583474 6584143 Lapu2g00743 2 6583474 6584143 ECH