Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00737 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCAGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGACATGTGAGAGTTGGTCTTGCGAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCACGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCGGCTTCACAACCATTGGAACCTGGTGAGAGTAAAAGAGGACCAAATTCACTTTCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACGGGATGCCTCTGGTTCCAATTCCAGGACCTGAAGCTGATGGGCATACCAAGATGGAAACAAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAATCAGGTTAGAGTGCATGGGAAGTAA 570 0.4386 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQPLEPGESKRGPNSLSKLKMGEKQQNHGMPLVPIPGPEADGHTKMETKMIDLNMKPNRIHEQASNNQVRVHGK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00737 189 Gene3D Classic Zinc Finger 2 91 - -
Lapu2g00737 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lapu2g00737 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lapu2g00737 189 MobiDBLite consensus disorder prediction 105 158 - -
Lapu2g00737 189 FunFam B-box zinc finger protein 19 2 92 - -
Lapu2g00737 189 CDD Bbox1_BBX-like 56 96 - -
Lapu2g00737 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lapu2g00737 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 - -
Lapu2g00737 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu2g00737 189 CDD Bbox1_BBX-like 4 47 - -
Lapu2g00737 189 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Lapu2g00737 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lapu2g00737 189 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00737 Lapu-Chr2 6526709 6531168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00737 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 3.44e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu2g00737 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00737 - - gmx:100780544 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00737 2 6526709 6531168 Lapu2g00737 2 6526709 6531168 ECH
Lapu9g02431 9 38744976 38746462 Lapu2g00737 2 6526709 6531168 ECH