Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00735 ATGGAGCAGCCGCTTCAACCACAGCCGGACGCTGCGGCCAACGCGGCTCGCGGTTTGGAGGTCTCCCAACCGGTGGGAGCTCCCCTGGCGCTTGCTGCCGATGCTGATGTGGCGGAAAAAGATGTTAATTGTTGCGTGCCGAATTCGGAGGTTACAGTTGTTGAAGGCGCCGTTTTGAAACGGAAGCGCGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGCGCCTCTGGTGAGGCAGAAGAAGGATGAGGAGGACGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGCAGGGGTTGTCCTAAAGCGTATCATCCGACGTGTGTTAAGCGAGACGAAGCCTTTTTTCGATCAAAGGCGAAGTGGAATTGCGGTTGGCATATATGTAGCGCCTGTCAAAAGGCGTCGCATTATATGTGCTATACTTGCACGTTCTCTTTGTGCAAGGGATGCACTAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGCTGATCGAGAACAGTGTCCAAGGAAATAAGGAAACGTGTGAAGTGGATTTCGATGATAAAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTACGAGCTAAAAACCCTTGGAAAGGTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCCTGTATAGACATGGAATCAAATAATTTGAAGAACAAAAAGCCCAAGAGACAGCCGAAGCTTCTTGGTAAGGGTGATTGCCTGGACAGGATAGGTTCAGGTGGTGACAGAGGTATGTCTTTGCCTGAATGCACAAAGTGGGCATCAAAGGAGCTATTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTCGAGTATGTAAAGAAAAATAACCTTCGTGATCCTCATCAGATGTCCCAAATTGTTTGTGATTCTAGACTACTAAGTTTGTTTGGAAAAGCACGAGTTGGCCACATTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAAGACAATGGACCTGCAGAAAATACTTTTGGAGCAGGAATTATTAATACTGTTGCTAGTGAAGGGGAGGCCATTGAGAATTACAATAAACAGTTCATGTTAGCTGATGACAAGAGATGTAAAACACATAAAAAGGCTGATGTTCCAGTTCCACGAAATAATCCAGATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCGTTTGTGCGGATAAGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCATACAAAATTGGGACAAGAACAACTAATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCCGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCATTAACGCTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTGAAAGAATATGTGGAGAAGTTGCAGCTACTGAACTCTCCAGAGGAGCATCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGACGGAGAGTCAGATGAAAGGAAGCAAGATAACAATATATTTTCTAAGTATCTTGGGTTTGATAGAAGAGAGAGGGTCTCTTTTTTTCCAAGAATTTCGAATGGTGTATTCAATGACGAGGGAGGCAAAGCACAAGACTTGCCTATTACCCGAGAACCGGTTGGGAATATATGCACAGTGAAGAACTGTGATGATACAGCTATGAAGGATAGCACTAGTACAGTTGTGAAATCAGAAGTGTCTGGTGTTGCAGTGGACATTTCACCATCACTTATCCCTGCTGAGATGCATCAGCCACTTAATGATTTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAAGTTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAGTGGAATGTAAGTGGAGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACTGACGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTGCTCTCTCTAGGGGTCAGTGTTACATCGGATAATAAAGATAGTAGTCAGGAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCAGATGGGCAAATTATTGAACAGAGCAAAGCATTAAAAGTGGATAATACCTCTACCCAGTCTGATGGTAAAGATGAGCCTGTTAGGAGCAATGGATGGCTTGGGCAGCTGCACTTATACCCTTCACAATTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATTCTTCTGATAAATTAAGGAAAGGTCATGGGATTGTGCAAAATTCCAAAGATAATGGAAATAATGGCTCAAACAGGACATTGGATGGGCAGAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACTTGGAGACACCCTAATGTTAATAGCTCTTCCAATTGCTTGGTTACCACGTCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAGTTGGGATTTGATTTGCACAATCCTCCTTCCCCTCCAGCATGTAATACGTCATCTGGGCAGACCTGGAGACACCCTAATGTTAATAGCTCTTCCAATTGCTTGGTCACCACGTCAGCTCATGTTTCTGTTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACTTGGAGTCACCCTAATGTAAATAGTTCTTCCGATTGCTTGGTTAACACACCAGCTCATGTTTCTGCTACAAAAGCATCACCACATAAGCTGGGATTTGATTTGCATAACCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACATACCTGGAGACACCTTGATATAAATAGTTCCTCCAATTGCCTAGTTACCCCATCAACTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAACATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGATGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATTCAGGTAAAGGTGATGCACTAAGCTCCACTGGAGATTTAAACTTACCATCCCAACCAACAGCTGCAGAGGAACCATTACGGCAAGCAGATGTACATCACAACCATCAAAGAATTTCTGTGGAGCATTCTTCAAGAAGTTCAAAAGTTGAGGTGGGTACAAAGAACGCAAGTGTTTCAGGTAACCAATGGGATTCAGGCTCAGAAAATTCACCTGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGTCTAGAGAGTACACCCTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAACCAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGATTTGGGGATAGCCAAACAAGATATGGAAGTGATCGTTTTTCTGTGCCCAGAGATCGGGGTTCTCAAGGTCATGCTAGTCATGCCAGGGAATCTGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCATCGTATGGTGTTGGAAATGGAGGCTCATATAGGCCTCTACCTAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGTGCATCCTGTGATTACTTGCACCCATGA 4308 0.4294 MEQPLQPQPDAAANAARGLEVSQPVGAPLALAADADVAEKDVNCCVPNSEVTVVEGAVLKRKRGRPAKGAPKVAPLVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCVKRDEAFFRSKAKWNCGWHICSACQKASHYMCYTCTFSLCKGCTKDADFVCVRENKGLCGICMRTIMLIENSVQGNKETCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKGVAPMSYKVQSPHELYHLRDDKGSGSENSCIDMESNNLKNKKPKRQPKLLGKGDCLDRIGSGGDRGMSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPHQMSQIVCDSRLLSLFGKARVGHIEMLKLLESHFLLKDNGPAENTFGAGIINTVASEGEAIENYNKQFMLADDKRCKTHKKADVPVPRNNPDAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTNIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEEHQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDNNIFSKYLGFDRRERVSFFPRISNGVFNDEGGKAQDLPITREPVGNICTVKNCDDTAMKDSTSTVVKSEVSGVAVDISPSLIPAEMHQPLNDFLNDRSWNYQDPTGKVQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSGKCSKNVSLPFNNPLLSLGVSVTSDNKDSSQEDAGKNVVKNGISADGQIIEQSKALKVDNTSTQSDGKDEPVRSNGWLGQLHLYPSQLSTAIPEKLNENSSDKLRKGHGIVQNSKDNGNNGSNRTLDGQSNSGQSYQKPSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHPNVNSSSNCLVTTSAHVSVTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPNVNSSSDCLVNTPAHVSATKASPHKLGFDLHNPPSPPACNTSSGHTWRHLDINSSSNCLVTPSTHVSGTKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDSGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHNHQRISVEHSSRSSKVEVGTKNASVSGNQWDSGSENSPVVPSPATLGLAIDTTWRLGLESTPLGWSGIDQGNANVGWGVGQPAVQETRSSNSYTSVVTPGFGDSQTRYGSDRFSVPRDRGSQGHASHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYLHP* 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00735 1435 Gene3D SWIB/MDM2 domain 298 389 IPR036885 -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 859 881 - -
Lapu2g00735 1435 SUPERFAMILY GYF domain 748 804 IPR035445 -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 618 638 - -
Lapu2g00735 1435 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Lapu2g00735 1435 Gene3D - 753 809 IPR035445 -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 1257 1292 - -
Lapu2g00735 1435 FunFam Zinc finger CCCH domain-containing protein 19 445 574 - -
Lapu2g00735 1435 CDD PHD5_NSD 86 131 - -
Lapu2g00735 1435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 175 IPR013083 -
Lapu2g00735 1435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 19 1435 - -
Lapu2g00735 1435 Pfam Plus-3 domain 449 552 IPR004343 GO:0003677
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 1268 1292 - -
Lapu2g00735 1435 ProSiteProfiles Plus3 domain profile. 444 577 IPR004343 GO:0003677
Lapu2g00735 1435 CDD GYF 751 806 IPR003169 GO:0005515
Lapu2g00735 1435 SMART gyf_5 752 807 IPR003169 GO:0005515
Lapu2g00735 1435 Gene3D - 445 574 IPR036128 GO:0003677
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 253 278 - -
Lapu2g00735 1435 SMART PHD_3 86 132 IPR001965 -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 859 875 - -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 618 655 - -
Lapu2g00735 1435 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Lapu2g00735 1435 SUPERFAMILY CCCH zinc finger 1410 1434 IPR036855 GO:0046872
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 1338 1363 - -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 1338 1388 - -
Lapu2g00735 1435 SUPERFAMILY Plus3-like 445 573 IPR036128 GO:0003677
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 917 968 - -
Lapu2g00735 1435 ProSiteProfiles GYF domain profile. 751 805 IPR003169 GO:0005515
Lapu2g00735 1435 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Lapu2g00735 1435 SMART rtf1 444 554 IPR004343 GO:0003677
Lapu2g00735 1435 SMART swib_2 304 387 IPR019835 -
Lapu2g00735 1435 MobiDBLite consensus disorder prediction 905 968 - -
Lapu2g00735 1435 SUPERFAMILY FYVE/PHD zinc finger 67 131 IPR011011 -
Lapu2g00735 1435 Coils Coil 578 598 - -
Lapu2g00735 1435 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Lapu2g00735 1435 CDD SWIB-MDM2_like 307 382 - -
Lapu2g00735 1435 Pfam GYF domain 754 795 IPR003169 GO:0005515
Lapu2g00735 1435 ProSiteProfiles Zinc finger C3H1-type profile. 1410 1435 IPR000571 GO:0046872
Lapu2g00735 1435 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Lapu2g00735 1435 FunFam Zinc finger CCCH domain-containing protein 19 76 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00735 Lapu-Chr2 6488557 6495980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00735 84 167 PHD Transcription Factor Family AT5G36670 32.558 2.39e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lapu2g00735 Plus-3 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00735 - - vun:114173625 2652.08