Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00731 ATGGAGTGCATGGAGGCAGCTTTGAAGAGCAATTTTAGGAAAGAAATGACAGTGGAGCTCAGTCCAGAAACCTTCATGGAAGAGTTTAGTGTGCAAAACGGCGCCACTTGCGACGACTTTTTCGTGGACGACCTTCTTGACTTCTCGCACGTTGAGGAAGAACCGGAACAACAACAGAAGGAACAAGACTCTCTTTGTCCATCCCTTCAAAAAGAAAACCCAACCCAAGAACTTTGTGCTTTCAAAGCCGATTATTCCTCTCTGCCCTCGACCGAACTTAGTGTTCCGGCGGATGACGTGGCGGACTTCGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTCTCCGAATTTTCTGCGGCGCTCCCCACCGTAACGGAAAACAACCCGGCGGGCCTTGCGGGGAAAGAGCCAAAGCCCGAACCGGAAAGCCCAGTTTTCACTTTCAAAACACCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGGTCGTGTTTGGCCACTCGGTTCTCCTTCTTTCACTGAATCTTCGTCGAGCTCCACCACCACCTCATCCTCTTCCTCCTCCTCTCCCTCTAGCCCCTTGCTAATATACACCAACTTCCCTCGTAGCCTCGACCACATTTGCTCCCAGCCCAAACCCAATAAACCAAAGAAAAAACCCTCTTCCGACAGTGTGGGCACCCTTGCGCCGAGACGGTGTAGTCACTGCGGCGTGCAAAAAACCCCTCAGTGGCGAACTGGGCCGCTGGGGCCAAAAACGCTGTGTAACGCGTGCGGGGTCCGGTTCAAGTCGGGACGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTACACTCGAACCATCATCGTAAAGTGCTGGAGATGCGGCACAAGAAGGAGATGGTGTCTGGGATTGAAACTGGTTTTAACTCTGCTCCTGTTGTTCCCAAATTTTGA 963 0.5254 MECMEAALKSNFRKEMTVELSPETFMEEFSVQNGATCDDFFVDDLLDFSHVEEEPEQQQKEQDSLCPSLQKENPTQELCAFKADYSSLPSTELSVPADDVADFEWLSHFVEDSFSEFSAALPTVTENNPAGLAGKEPKPEPESPVFTFKTPVQTKARSKRSRNGGRVWPLGSPSFTESSSSSTTTSSSSSSSPSSPLLIYTNFPRSLDHICSQPKPNKPKKKPSSDSVGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRHKKEMVSGIETGFNSAPVVPKF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00731 320 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Lapu2g00731 320 PIRSF Txn_fac_GATA_plant 1 317 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu2g00731 320 PANTHER GATA TRANSCRIPTION FACTOR 32 303 - -
Lapu2g00731 320 MobiDBLite consensus disorder prediction 128 196 - -
Lapu2g00731 320 MobiDBLite consensus disorder prediction 209 233 - -
Lapu2g00731 320 FunFam GATA transcription factor 226 310 - -
Lapu2g00731 320 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Lapu2g00731 320 CDD ZnF_GATA 235 283 IPR000679 GO:0006355|GO:0043565
Lapu2g00731 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 292 - -
Lapu2g00731 320 Gene3D - 230 303 IPR013088 GO:0006355|GO:0008270
Lapu2g00731 320 SMART GATA_3 230 284 IPR000679 GO:0006355|GO:0043565
Lapu2g00731 320 Pfam GATA zinc finger 236 270 IPR000679 GO:0006355|GO:0043565
Lapu2g00731 320 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00731 Lapu-Chr2 6406597 6408835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00731 5 320 C2C2-Gata Transcription Factor Family AT5G66320 50.437 3.39e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu2g00731 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00731 - - var:108335072 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00731 2 6406597 6408835 Lapu2g00731 2 6406597 6408835 ECH