Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00687 ATGACAAAATCTTCATTCCGTTTTCTTGCTTTATATCTTATCAGTTTTCTCTGCTTTGTGTCTTGTTTTGTGGGTTTTACAGGTGGGATTTTGCAAAACTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACGGAAGGACCGTGAAGACGATCTTGACATTGAGGCAGGGAAACTCAACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGACGAGATTACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGACAAAGTGCACCCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGCAATGCTTGAGGTTCTTGACAAATCCAACGTAGTCAATCATAGTTTGTCAGAATCCTACAAAGAGGGGAGCCCCATTGACAGGACCAGAATGTCGGTCACAAATGGTTTGAGGGTCAAGCTTAGGGCCATGATGAATGACTTTCAGTCCCTGAGAGACAAAGTTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGCAACGGGTGAGGTTCCCACTGAGGAGGTCATGGATAAGATGGTTTCTGGGAGTCTCAGAGTAGAGTTTTTGTCTGGGAAAACGGATGCAGAATTGGGCACTCAATTTAGGCATGAGGCCGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGCGTGGATAACATTGAGGATAATGTGGCTAATGCGGGTAACTTCATCCATGGTGGAACTAATAGTCTCTACTATGCCAGCCAGATGAAGAAGAAGAACAGAAAGTGGGTCTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 1005 0.4418 MTKSSFRFLALYLISFLCFVSCFVGFTGGILQNFAKMNDLMTKSFLSYVELKKQARKDREDDLDIEAGKLNPTEDRNLSQFFQEVEAIKVEMDEITNLLFDLQQLNEETKCTHSAKVLRGLRDRMESDMVAVLRKARIIKAMLEVLDKSNVVNHSLSESYKEGSPIDRTRMSVTNGLRVKLRAMMNDFQSLRDKVLSDHKEDLKRRYYTATGEVPTEEVMDKMVSGSLRVEFLSGKTDAELGTQFRHEAVMDIQRSLNKLHQVFLDMAVLVETQGESVDNIEDNVANAGNFIHGGTNSLYYASQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00687 334 Gene3D - 236 333 - -
Lapu2g00687 334 Gene3D - 73 206 - -
Lapu2g00687 334 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 75 206 - -
Lapu2g00687 334 Coils Coil 88 108 - -
Lapu2g00687 334 Pfam SNARE domain 278 326 IPR000727 -
Lapu2g00687 334 Pfam Syntaxin 80 275 IPR006011 GO:0016020
Lapu2g00687 334 SMART tSNARE_6 235 302 IPR000727 -
Lapu2g00687 334 SUPERFAMILY t-snare proteins 76 295 IPR010989 GO:0016020|GO:0016192
Lapu2g00687 334 SMART SynN_4 73 200 IPR006011 GO:0016020
Lapu2g00687 334 CDD SynN 78 235 IPR006011 GO:0016020
Lapu2g00687 334 PANTHER SYNTAXIN 76 323 IPR045242 -
Lapu2g00687 334 CDD SNARE_syntaxin1-like 246 299 - -
Lapu2g00687 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 302 IPR000727 -
Lapu2g00687 334 FunFam Syntaxin 132 235 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00687 Lapu-Chr2 6040339 6041541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00687 37 334 SNARE and Associated Proteins AT2G18260 59.935 8.62e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00687 K08486 - gmx:112997615 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00687 2 6040339 6041541 Lapu2g00687 2 6040339 6041541 ECH