Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00682 ATGTCGTTGAAAAGCATAGTAAGAGAACTAAAGGAGATGAGAGATGGGATTGGCAGCATGTCAAGGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCGATTCAGCAAGGGCAGTGGGCGAATTTACCCCCTGAGTTGCTTCTGGACATAATAAGTAGGGTGGAAGAGAGTGAGACTACCTGGCCTGCACGTGCTGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCGTGGAGGGATGTCACGAAAGAGATTGCTAAGACTCCTGAACAATGCGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGCCCTCGTGATTCTCCTATACAGTGCTTTATCAGGAGGAACAGAGATACTTCGACATATCTATTGTACATTGGCCTGGTGCCATCGGAGAATGAGACTGATAAGTTGCTATTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTTGTTGTGTCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGATAGCCAACCACCACCCGGAGCTGCAATTCAACAAGATTGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTCCGGCATTTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGACCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTTTCAGCTATTCAGGAAGGTGGCAATGCTCCAACACCTACATCTTTACCTCAAATCATTGACGAGCCTTTTTCTCCCTCACCAGCACTAAAAGGAAAAGGTCCAAGTAGAGATTTAAATGACGTAAACCTCCCTAAGCTACCAGTACCTTGCCAAGGCTCAGCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTCACAGTGGCTTCTGTTAAAAACTTTCAACTCGTGGCCGCCGTTGATCCGTCTCATAATGTTTCTGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCCGCCTTCCAAGCCTTTGCCATATGCCTGAGCAGCTTTGATACCAAGCCAGCCTGTGAATGA 1245 0.453 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWANLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRDTSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPPGAAIQQDCRSSRRFHSKQVSPRVPAFNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGNAPTPTSLPQIIDEPFSPSPALKGKGPSRDLNDVNLPKLPVPCQGSAEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00682 414 MobiDBLite consensus disorder prediction 268 305 - -
Lapu2g00682 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lapu2g00682 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Lapu2g00682 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Lapu2g00682 414 Gene3D - 48 104 - -
Lapu2g00682 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Lapu2g00682 414 CDD F-box_AtTLP-like 55 99 - -
Lapu2g00682 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Lapu2g00682 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Lapu2g00682 414 Pfam Tub family 116 409 IPR000007 -
Lapu2g00682 414 PANTHER TUBBY-RELATED 49 412 - -
Lapu2g00682 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Lapu2g00682 414 MobiDBLite consensus disorder prediction 268 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00682 Lapu-Chr2 6012190 6015725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00682 1 414 TUB Transcription Factor Family AT2G18280 64.183 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu2g00682 Tub 7.9e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00682 K19600 - gmx:100798958 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00682 2 6012190 6015725 Lapu2g00682 2 6012190 6015725 ECH