Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00678 ATGGAAATGGGAGGGCAAGATAAGGAAATAGAGACGCCAACAACTTTAGGTTACCACCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACAGTTGGTGAAAGAAGTAGCACTCATCATGATCATGATCAACTTCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCTTCCTCTTGCACCCCGTCAACCTCATAGACTCACATCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAATCCCCTAAGAACACCACACCCTCAGACAACAGCAATAGCAACAGCAGCAGCAGCCACAACAACCTCGACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGTACGCCGAAATCACTAATATGCGCCGCGTGTGACTGCCACCGCAACTTCCACAGGAAAGAGGTTGAGGGAGAGTTACATCCACAACAACCACCACCACTGTCACTACTACAACAACAACATGCTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGACACCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATAGATTAGTTGGCAGCAGTGGTACACCAAGTTTGGTGCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACTGGAGGAGCACAGTTGTCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAGTTCTCTCAGCACCAGAAGGATATGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1020 0.4882 MEMGGQDKEIETPTTLGYHLPNRDSSSSSSKLSSPTVGERSSTHHDHDQLHQPPHQTHTLIFNDPPHHNLYPPPPPPLPLAPRQPHRLTSDPDLSTPIAPTSNPLRTPHPQTTAIATAAAATTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPKSLICAACDCHRNFHRKEVEGELHPQQPPPLSLLQQQHAPNYHSYYPNKHNGHLHYPTPSPSSLHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDMMMEFAEKIGWKIQKHNEQEVQQFCSQVGVKRQVFKVWMHNNKKHPM* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00678 339 MobiDBLite consensus disorder prediction 89 110 - -
Lapu2g00678 339 Pfam ZF-HD protein dimerisation region 129 181 IPR006456 -
Lapu2g00678 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 131 180 IPR006456 -
Lapu2g00678 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 112 336 - -
Lapu2g00678 339 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 130 181 IPR006456 -
Lapu2g00678 339 MobiDBLite consensus disorder prediction 18 39 - -
Lapu2g00678 339 MobiDBLite consensus disorder prediction 1 110 - -
Lapu2g00678 339 SUPERFAMILY Homeodomain-like 268 335 IPR009057 -
Lapu2g00678 339 Gene3D - 267 338 - -
Lapu2g00678 339 NCBIfam homeobox domain, ZF-HD class 279 336 IPR006455 -
Lapu2g00678 339 MobiDBLite consensus disorder prediction 67 83 - -
Lapu2g00678 339 FunFam Zinc-finger homeodomain protein 2 267 339 - -
Lapu2g00678 339 MobiDBLite consensus disorder prediction 204 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00678 Lapu-Chr2 5971147 5974383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00678 95 336 ZF-HD Transcription Factor Family AT2G18350 45.935 6.72e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu2g00678 ZF-HD_dimer 2.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00678 - - vra:106776405 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00678 2 5971147 5974383 Lapu2g00678 2 5971147 5974383 ECH