Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00676 ATGCATCACGGTTGCAGCGGCTCCCAGGGGCACGTCATGGGACCCTGTACATGTGGCACGTTCCACAGCCAAGCCACTTCCTTCTCCATGCTCTTCTCACTGCCCAACCACAAACCACCCTACCAAGATTCCGACATCCATGATTATTCCTTCACCCCCTCTTCCTCTTCCTCTTCCTCTTCCGTTGACTGCACCCTCTCCCTCGGAACCCCATCCACCCGTTTCTCCGAAGACGAGGAAAAACGAACCCGCCACGAACGTCGCTCCGTTTCTAACTTCTGCTGGGACTTGCTACAATCCAAACACAACCCTCAATCCCAAACCAAATCCTCCCGAACCTCCAATAACACCTCAAACACCGACCCTCTCCTCGCTCGTCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGTCCCAAGTCACTGTGCAATGCATGTGGGATTAGATTCAAGAAGGAGGAAAGAAGAGCGAGTGCTGCGGCGTCGGCGCCGCCGCCGGCTTCTGGCAGCGTCATGGAATCGGCGCAGGTGTACAACAACTCGTGGTACGCACACCCACAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGCGGATGACGGCGATCTAGACGGCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCACGGACAGAACGAGCCTCGTCCACGACTTCACAAGATGA 735 0.5619 MHHGCSGSQGHVMGPCTCGTFHSQATSFSMLFSLPNHKPPYQDSDIHDYSFTPSSSSSSSSVDCTLSLGTPSTRFSEDEEKRTRHERRSVSNFCWDLLQSKHNPQSQTKSSRTSNNTSNTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAASAPPPASGSVMESAQVYNNSWYAHPQSQKMQCFSPGMGNEFRFADDGDLDGDNGIPFLSWRLNVTDRTSLVHDFTR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00676 244 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Lapu2g00676 244 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Lapu2g00676 244 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Lapu2g00676 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 163 - -
Lapu2g00676 244 Gene3D - 124 181 IPR013088 GO:0006355|GO:0008270
Lapu2g00676 244 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
Lapu2g00676 244 SMART GATA_3 122 174 IPR000679 GO:0006355|GO:0043565
Lapu2g00676 244 MobiDBLite consensus disorder prediction 101 123 - -
Lapu2g00676 244 PANTHER GATA TRANSCRIPTION FACTOR 18 11 244 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00676 Lapu-Chr2 5949290 5950628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00676 3 244 C2C2-Gata Transcription Factor Family AT3G50870 43.643 8.19e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu2g00676 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00676 - - gmx:100790571 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00676 2 5949290 5950628 Lapu2g00676 2 5949290 5950628 ECH