Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00664 ATGGAGACGAAGGACAAACTGAATAACGAGGATCCTGCTGTGGAGTCTCCAACTTCGGTTCTTGAAGACGAGGATGTTTGTGCCCCCAAAGATGAAGTTAAGTCGGAGGAAGAATTAATTGCTGATGTGAAAGACGATGGGTCGTCTCTTGTATCGAAAACTATGGCAGAGGAGGAAGCGAAGTTACTTGAGGCAAGGATAAAGGAAGAGGAGGTGCAGTGCGAAGAGGCACGTGACCTCAACGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAGTTTTTGCTGGAGAAAATGGATGACATCGCACTTACTGCGGATCAACAAGTGAAAGTGGAAGATCTAGAGAGCAATCCTTCTGCAAAGAAGGGCCGTGGATCGAAAAGAAAAGCTGCTTCCCAGTACAATACTAGGAAGGCTAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACAGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGTGGAAAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAGCGATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCCATTATCTACCATGGTAACAAGAAGGAGAGGGATGAGATCCGAAGGAAACATATGCCTACTAAAACAATTGGCCCAAAATTTCCCATAGTCATAACTTCTTACGAGGTTGCATTAAATGATGCTAAGAAATATTTCAGGCACTACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCACAATGTAAATTAGTGAAGGAGTTGAAATACATAAATGTTGAAAACAAGCTTCTTCTAACTGGAACACCTCTTCAGAATAACCTGGCCGAGCTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTCGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGTGAAGGGCAATAATGAAGCAACCAAGGAAGAACTGGAAGAGAAACGAAGAGCTCAAGTAGTAGCAAAGCTTCATGCTATTCTTAGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCAGGGAAAAAAGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTCAAAGAAAAGATGTCAAGTGAACGCCCTTTTTCTGGAAGTATGTTTCGTAATTTGGCTATTCATCTTAGAAAAGTGTGTAACCATCCTGATCTTCTAGATTCAGCTTGTGATGATACTTCTTTATATCCTCCTTTAAATGAGATAGTTGAACAGTGTGGAAAATTCCATCTGCTTGATCGATTGCTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGGTTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCCTTGAGGTTTGCAGGCTTGACGGTTCTGTGAGACTGGATGAGAGGAAACGACAGATCCGGGACTTCAATGATGCAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCCGGTGGATTGGGAATCAACCTCACTGCAGCCGACACTTGCATTCTTTATGACAGCGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCACAGAATTGGTCAAACAAAGCCTGTTCATGTCTACCGGCTCTCGACTGCTCAATCTATAGAGGATCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATCGGGAAAGGACAGTTTCATCAAGAACGTTCAAAAACTGTTAGTATGAATGAGATGGAGGAAGAGGATCTTTTGGCATTGCTTCGTGACGAAGAAACAGCCGAAGATAAAATGATACGAACAGGTATTAGTGATGAAGACCTGGAGAAGCTGTTGGATCGCAGTGATCTTATCGTCAACAACTCAGACGATGGTAACTTGAAAACTCCATGCTGTACGTTTCCTCTTAAAGGGCCAGGGTGGGAAGTGGTAATTCCAACTGCGAGTGGGGGCATGCTCTCTACTCTTAACAGCTAG 2289 0.4181 METKDKLNNEDPAVESPTSVLEDEDVCAPKDEVKSEEELIADVKDDGSSLVSKTMAEEEAKLLEARIKEEEVQCEEARDLNDTQFNKLDELLTQTKLYSEFLLEKMDDIALTADQQVKVEDLESNPSAKKGRGSKRKAASQYNTRKAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQAIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGNKKERDEIRRKHMPTKTIGPKFPIVITSYEVALNDAKKYFRHYNWKYLVVDEGHRLKNSQCKLVKELKYINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSVKGNNEATKEELEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPGKKEIIIYANMTEHQKNLQDHLVNKTLGNYFKEKMSSERPFSGSMFRNLAIHLRKVCNHPDLLDSACDDTSLYPPLNEIVEQCGKFHLLDRLLQRLFARNHKVLVFSQWVKVLDIMDYYFSEKGLEVCRLDGSVRLDERKRQIRDFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERSKTVSMNEMEEEDLLALLRDEETAEDKMIRTGISDEDLEKLLDRSDLIVNNSDDGNLKTPCCTFPLKGPGWEVVIPTASGGMLSTLNS* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00664 762 CDD DEXHc_HELLS_SMARCA6 188 424 IPR044753 GO:0005524
Lapu2g00664 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 716 IPR027417 -
Lapu2g00664 762 Gene3D - 159 421 IPR038718 -
Lapu2g00664 762 SMART helicmild6 546 630 IPR001650 -
Lapu2g00664 762 SMART ultradead3 187 383 IPR014001 -
Lapu2g00664 762 MobiDBLite consensus disorder prediction 1 32 - -
Lapu2g00664 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 422 IPR027417 -
Lapu2g00664 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 372 IPR014001 -
Lapu2g00664 762 FunFam Chromatin complex subunit A 106 432 661 - -
Lapu2g00664 762 PANTHER SNF2/RAD54 HELICASE FAMILY 31 698 - -
Lapu2g00664 762 MobiDBLite consensus disorder prediction 121 147 - -
Lapu2g00664 762 FunFam ATP-dependent DNA helicase DDM1 185 431 - -
Lapu2g00664 762 Gene3D - 428 729 IPR027417 -
Lapu2g00664 762 Pfam Helicase conserved C-terminal domain 520 630 IPR001650 -
Lapu2g00664 762 Pfam SNF2-related domain 194 494 IPR000330 GO:0005524|GO:0140658
Lapu2g00664 762 Coils Coil 53 80 - -
Lapu2g00664 762 CDD SF2_C_SNF 506 640 - -
Lapu2g00664 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 686 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00664 Lapu-Chr2 5834561 5840693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00664 177 651 RAD5 or RAD16-like Gene Family AT3G16600 23.339 7.67e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu2g00664 SNF2_N 2.1e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00664 K19001 - gmx:100777687 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00664 2 5834561 5840693 Lapu2g00664 2 5834561 5840693 ECH