Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00662 ATGATGAATAGTGCAGAGATGAGCTCTAACTTCTCGACGGGACCCGCTCTGCCTCCTCCCTCGCCAAACCTTGCTCTAGGCCTCAAAGGTGGCACCTTCACGTACGAGGAACTAGCTGCTGCCACCAACGGATTCGCTGAAAAAAATCTGATAGGACAGGGTGGCTTCGGTTATGTCCACATGGGTGTGTTGCCTAATGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCGGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCGGAGATTGACATCATTAGTCGTGTTCATCATCGCCATCTCGTGTCACTCGTTGGATACTGTATTTGTGGTGGCCAGAGAATGTTAGTCTATGAATTTATTCCCAATAACACTTTGGAATATCACCTTCATGGAAAGGGCAGGCCTACAATGGATTGGCCTACTAGAATGCGAATTGCAATAGGATCATCAAAAGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCGAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACCCGAGTCATGGGAACTTTCGGATACCTAGCCCCAGAGTATGCGTCAAGTGGAAAATTGACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCTCTACTGACTCGTGGATTGGAAGAAGATGGCAACTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAATTGGCAAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGTCATTCTTCCAAGAAACGTCCAAAAATGAGTCAGATTGTAAGAATATTGGAAGGAGATGTGTCGCTGGATGACTTGAAAGATGGGATGAAGACAGGGCAGAGTTCTGTTTTCAATACTTCATCTGAGACACAACAGTATGATACAATGCAATACAATGCTGACATGGAAAAGTTTAGAAAGACAGTGTTTTCTAGCCAAGAATTTGGCACCAGCAGTGGTGGCTCTAGTGGTGAAATTGGACAGAGTCATCCGACAGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGGGCAAGTTTGCCGAGCCTGGGGATCCAGAATATGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAACTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGATCTTGAGAAATATGATCCACAGAATGACCCAAATGTATCTGGAGATCCATACAAGACATTGTTCGTGGCTAAACTTAGTTATGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGTTAGTAGAGCAGAGCAGTGATGTTCCATCGTTCCTTTTGGCCTTTGTTTTCAAGCAAGAAAAGGAGACTGACTTCTGTTATTTTCTGCACTGGGCTAGAGTATCTATCAAAAACAAATCAGCAATTGAGAAGATGTCATGTTTTTCTGCAACTATTGCTGGTGGTGATTCATCTCTCGATGGGAGCTCTGCTTATAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAAAATATGACTTGA 1905 0.4562 MMNSAEMSSNFSTGPALPPPSPNLALGLKGGTFTYEELAAATNGFAEKNLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSSKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSSKKRPKMSQIVRILEGDVSLDDLKDGMKTGQSSVFNTSSETQQYDTMQYNADMEKFRKTVFSSQEFGTSSGGSSGEIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVGKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEDLEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRLVEQSSDVPSFLLAFVFKQEKETDFCYFLHWARVSIKNKSAIEKMSCFSATIAGGDSSLDGSSAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGRENMT* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00662 634 SUPERFAMILY RNA-binding domain, RBD 473 514 IPR035979 GO:0003676
Lapu2g00662 634 Gene3D Phosphorylase Kinase; domain 1 25 120 - -
Lapu2g00662 634 FunFam Proline-rich receptor-like protein kinase PERK1 121 329 - -
Lapu2g00662 634 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Lapu2g00662 634 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 388 476 IPR022023 -
Lapu2g00662 634 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 29 368 IPR047117 -
Lapu2g00662 634 Gene3D - 472 632 IPR012677 -
Lapu2g00662 634 ProSiteProfiles Protein kinase domain profile. 45 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00662 634 SMART serkin_6 45 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g00662 634 Gene3D Transferase(Phosphotransferase) domain 1 121 336 - -
Lapu2g00662 634 Pfam Protein tyrosine and serine/threonine kinase 48 250 IPR001245 GO:0004672|GO:0006468
Lapu2g00662 634 FunFam proline-rich receptor-like protein kinase PERK1 23 120 - -
Lapu2g00662 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lapu2g00662 634 MobiDBLite consensus disorder prediction 604 634 - -
Lapu2g00662 634 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00662 Lapu-Chr2 5808176 5826377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00662 21 365 Trihelix Transcription Factor Family AT1G70460 62.248 1.79e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu2g00662 PK_Tyr_Ser-Thr 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00662 - - gmx:100777163 667.922