Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00652 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGACCCCAAAACCCACAACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGATTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACTCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCCGAATCAGATTCGAAGGCCGTGACCGGTGATTCATCCCCTCCGGCGGCGGCGGCGGCGGTTACTGCGCCTCCACCGCCACCTGCTCCGCCGGCTAGTTCTAAGTCAAACAGTGTTGTTGTATCGTCGCCTGCTTTGCAGACACAAAATTCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAATCGCAGGCCAATCCTGCTATGAGTGGAAGCTGTAGCAGCGCCAGTACCAGTACCAGCACCACTAGCTCAACAAGCAACAGCAATGGTGGTGCTAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAACGTCCACAACTGCAAGCCTTCAATCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGGAGATCTCTCAAGGCCTTCATCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCATGGGTCATCCATTTTTGGAACAGGAGTCCAGGAGTGCCGTCAATATGCCCCACTGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTACAGAAAGCCGCCCAAATGGGTGCAGCTGCCACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCATCTGCCTCAACCTCATCAGGTCAGCCGGATAGTTTGCAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTAGGGCTTCCCTGCGACGGCAGCTCTGGACTAAAGGAGTTGATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACGACCCTTGATTTTCTCGGGCTGGGGATGGCGGCTGGGGGCAACCCTGGTGGAGGTTTATCGGCACTCATCACCTCAATCGGTGGTGGTCTGGATGTTACTGCTGCAGCAGCAGCAGCATCCTTTGGTAGTGGAGAATTCCCAGGCAAAGATATTGGGAGAAGTACTTGA 1572 0.5312 MPVDLDNVSTASGEASVSSSGNQTVTPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPAAAAAVTAPPPPPAPPASSKSNSVVVSSPALQTQNSELPENSPQVIEESQANPAMSGSCSSASTSTSTTSSTSNSNGGASSSVFASLFASSTTSTTASLQSQTPAFTDLIRAMGHPDHPGDLSRPSSSEPISLCLATNHGSSIFGTGVQECRQYAPLPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQPDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGGLDVTAAAAAASFGSGEFPGKDIGRST* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00652 523 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lapu2g00652 523 FunFam protein indeterminate-domain 12-like 40 108 - -
Lapu2g00652 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 480 IPR031140 -
Lapu2g00652 523 Gene3D Classic Zinc Finger 115 195 - -
Lapu2g00652 523 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lapu2g00652 523 Gene3D Classic Zinc Finger 41 107 - -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 238 297 - -
Lapu2g00652 523 SMART c2h2final6 61 83 IPR013087 -
Lapu2g00652 523 SMART c2h2final6 102 132 IPR013087 -
Lapu2g00652 523 SMART c2h2final6 137 157 IPR013087 -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 195 297 - -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 1 43 - -
Lapu2g00652 523 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 9 31 - -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 195 214 - -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 414 435 - -
Lapu2g00652 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lapu2g00652 523 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00652 Lapu-Chr2 5704789 5709416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00652 1 523 IDZ Gene Family AT5G66730 60.623 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g00652 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00652 K25869 - gmx:100806404 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00652 2 5704789 5709416 Lapu2g00652 2 5704789 5709416 ECH
Lapu3g01636 3 21187105 21190411 Lapu2g00652 2 5704789 5709416 ECH
Lapu2g00652 2 5704789 5709416 Lapu3g01636 3 21187105 21190411 PCT