Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00644 ATGAATCATCGACCTTTTCAAGACCACATGATGTTCATCTCTCAGTTATACCCTGCTGATGCTCCATACACTCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCCGAAGCCAACAAGAAGAGGAAGCTTAGTGCGGAGCAAGTCAATCTACTCGAGCAGAACTTTGGAAATGAGCATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCACCTTGCTCGAGAAATGTCGATTGGAGACCGAGGTGCTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATTCAGAGGCTGCTAGAAAGTGCTGATAGAGTTCCAAGCAACAGCTCTAGCTTGTCACAGTCACAATCACAATCTATGGAGGCGGTGGACCCACCACTCTTTGGGGAGTTTGGAGTTGATGGATATGATGATGATGTATTTTACGGGCCCGAGACTCACTACATCAACGCCTTGGAATGGATTAATCTGTATATGTAA 651 0.4531 MNHRPFQDHMMFISQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANKKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATLLEKCRLETEVLKLKDQLSEAEKEIQRLLESADRVPSNSSSLSQSQSQSMEAVDPPLFGEFGVDGYDDDVFYGPETHYINALEWINLYM* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00644 216 MobiDBLite consensus disorder prediction 159 176 - -
Lapu2g00644 216 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Lapu2g00644 216 CDD homeodomain 56 112 IPR001356 GO:0003677
Lapu2g00644 216 MobiDBLite consensus disorder prediction 156 176 - -
Lapu2g00644 216 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Lapu2g00644 216 MobiDBLite consensus disorder prediction 28 60 - -
Lapu2g00644 216 Coils Coil 103 130 - -
Lapu2g00644 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lapu2g00644 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Lapu2g00644 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Lapu2g00644 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Lapu2g00644 216 MobiDBLite consensus disorder prediction 45 60 - -
Lapu2g00644 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Lapu2g00644 216 Coils Coil 51 71 - -
Lapu2g00644 216 Gene3D - 47 120 - -
Lapu2g00644 216 Coils Coil 138 158 - -
Lapu2g00644 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 170 IPR045224 GO:0003700
Lapu2g00644 216 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00644 Lapu-Chr2 5658625 5660463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00644 1 216 Homeobox Transcription Factor Family AT4G36740 58.744 2.54e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu2g00644 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00644 K09338 - gmx:100809616 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00644 2 5658625 5660463 Lapu2g00644 2 5658625 5660463 ECH